Hi Otto,

could you take a look at the mariadb-related FTBFS of rmysql on mips64el?


Thanks

Andreas

On 2016-12-11 21:29, Dirk Eddelbuettel wrote:
> 
> On 11 December 2016 at 12:32, Andreas Beckmann wrote:
> | Source: rmysql
> | Version: 0.10.9-3
> | Severity: serious
> | Justification: fails to build from source (but built successfully in the 
> past)
> | 
> | 
> https://buildd.debian.org/status/fetch.php?pkg=rmysql&arch=mips64el&ver=0.10.9-3&stamp=1480467978
> | 
> |  fakeroot debian/rules binary-arch
> | CDBS WARNING:    simple-patchsys.mk is deprecated since 0.4.85 - please use 
> source format 3.0 (quilt) instead
> | test -x debian/rules
> | dh_testroot
> | dh_prep 
> | dh_installdirs -A 
> | dh_installdirs: Compatibility levels before 9 are deprecated (level 7 in 
> use)
> | mkdir -p "."
> | dh_installdirs              usr/lib/R/site-library
> | dh_installdirs: Compatibility levels before 9 are deprecated (level 7 in 
> use)
> | echo "R:Depends=r-base-core (>= 3.3.2-1), r-api-3" >> 
> debian/r-cran-rmysql.substvars
> | if test -f /usr/bin/xvfb-run; then                  \
> |              xvfb-run -a                    \
> |                     R CMD INSTALL -l 
> /«PKGBUILDDIR»/debian/r-cran-rmysql/usr/lib/R/site-library --clean     \
> |                              .      \
> |                             "--built-timestamp=\"Thu, 10 Nov 2016 06:12:59 
> -0600\""                 \
> |                             ;                               \
> |     else                                                    \
> |              R CMD INSTALL -l 
> /«PKGBUILDDIR»/debian/r-cran-rmysql/usr/lib/R/site-library    \
> |                             --clean  .  \
> |                             "--built-timestamp=\"Thu, 10 Nov 2016 06:12:59 
> -0600\""                 \
> |                             ;                               \
> |     fi
> | * installing *source* package 'RMySQL' ...
> | ** package 'RMySQL' successfully unpacked and MD5 sums checked
> | ./configure: line 21: warning: command substitution: ignored null byte in 
> input
> | ./configure: line 22: warning: command substitution: ignored null byte in 
> input
> | Found mysql_config cflags and libs!
> | Using PKG_CFLAGS=-I/usr/include/mariadb -I/usr/include/mariadb/mysql -g -O2 
> -fdebug-prefix-map=/build/mariadb-connector-c-dopxmU/mariadb-connector-c-2.3.1=.
>  -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
> -D_FORTIFY_SOURCE=2  -Wunused -Wno-uninitialized
> | -I/usr/include/mariadb -I/usr/include/mariadb/mysql -g -O2 
> -fdebug-prefix-map=/build/mariadb-connector-c-dopxmU/mariadb-connector-c-2.3.1=.
>  -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
> -D_FORTIFY_SOURCE=2  -Wunused -Wno-uninitialized
> | Using PKG_LIBS=-L/usr/lib/mips64el-linux-gnuabi64 -lmariadb
> | -L/usr/lib/mips64el-linux-gnuabi64 -lmariadb
> | ------------------------- ANTICONF ERROR ---------------------------
> | Configuration failed because libmysqlclient was not found. Try installing:
> |  * deb: libmariadb-client-lgpl-dev (Debian, Ubuntu 16.04)
> |         libmariadbclient-dev (Ubuntu 14.04)
> 
> This is (small shell script 'anticonf') by the upstream author (who is a
> friend) failing.
> 
> Did anything change with respect to mariadb libs on mips64el ?
> 
> We currently use
> 
>    Build-Depends: debhelper (>= 7.0.0), cdbs, r-base-dev (>= 3.3.2), 
> libmariadb-dev, r-cran-dbi (>= 0.4)
> 
> and Debian testing resolves libmariadb-dev just fine.  Same on mips64el?
> 
> Dirk
> 
> |  * rpm: mariadb-devel | mysql-devel (Fedora, CentOS, RHEL)
> |  * csw: mysql56_dev (Solaris)
> |  * brew: mariadb-connector-c (OSX)
> | If libmysqlclient is already installed, check that 'pkg-config' is in your
> | PATH and PKG_CONFIG_PATH contains a libmysqlclient.pc file. If pkg-config
> | is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
> | R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
> | --------------------------------------------------------------------
> | ERROR: configuration failed for package 'RMySQL'
> | * removing 
> '/«PKGBUILDDIR»/debian/r-cran-rmysql/usr/lib/R/site-library/RMySQL'
> | /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed
> | make: *** [R_any_arch] Error 1
> | 
> | 
> | Andreas
> 

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