Source: libbio-graphics-perl Version: 2.39-5 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
libbio-graphics-perl fails to build from source in unstable/amd64:
[…]
dh build
dh_testdir
dh_update_autotools_config
dh_auto_configure
perl -I. Build.PL --installdirs vendor --config "optimize=-g -O2
-fdebug-prefix-map=«BUILDDIR»=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config
"ld=x86_64-linux-gnu-gcc -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-Graphics' version '2.39'
dh_auto_build
perl Build
Building Bio-Graphics
dh_auto_test
perl Build test --verbose 1
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: The requested glyph class, ``arrow'' is not available: Can't locate
Bio/Coordinate/Pair.pm in @INC (you may need to install the
Bio::Coordinate::Pair module) (@INC contains: . «BUILDDIR»/t/../lib
/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/lib
/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/arch
/etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1
/usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24
/usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at
/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/t/../lib/Bio/Graphics/Glyph/arrow.pm
line 13.
BEGIN failed--compilation aborted at
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13.
Compilation failed in require at (eval 43) line 2.
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:447
STACK: Bio::Graphics::Glyph::Factory::make_glyph
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:342
STACK: Bio::Graphics::Glyph::make_subglyph
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:310
STACK: Bio::Graphics::Glyph::new «BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:270
STACK: Bio::Graphics::Glyph::Factory::make_glyph
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:346
STACK: Bio::Graphics::Panel::_add_track
«BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:414
STACK: Bio::Graphics::Panel::_do_add_track
«BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:386
STACK: Bio::Graphics::Panel::add_track
«BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:312
STACK: Bio::Graphics::FeatureFile::render
«BUILDDIR»/t/../lib/Bio/Graphics/FeatureFile.pm:675
STACK: t/BioGraphics.t:53
-----------------------------------------------------------
# Looks like you planned 49 tests but ran 4.
# Looks like your test exited with 2 just after 4.
t/BioGraphics.t ..
1..49
ok 1 - use GD::Image;
ok 2 - use Bio::Graphics::FeatureFile;
ok 3 - use Bio::Graphics::Panel;
ok 4
Dubious, test returned 2 (wstat 512, 0x200)
Failed 45/49 subtests
t/Wiggle.t .......
1..11
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok
Test Summary Report
-------------------
t/BioGraphics.t (Wstat: 512 Tests: 4 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 49 tests but ran 4.
Files=2, Tests=15, 1 wallclock secs ( 0.03 usr 0.00 sys + 0.50 cusr 0.04
csys = 0.57 CPU)
Result: FAIL
Failed 1/2 test programs. 0/15 subtests failed.
dh_auto_test: perl Build test --verbose 1 returned exit code 255
debian/rules:4: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
libbio-graphics-perl.2.39-5.unstable.amd64.log.txt.gz
Description: Binary data
