Your message dated Wed, 21 Dec 2016 09:51:05 +0000
with message-id <[email protected]>
and subject line Bug#848755: fixed in pbdagcon 0.3+20161121+ds-1
has caused the Debian Bug report #848755,
regarding pbdagcon: FTBFS: DNASequence.hpp:15:29: fatal error:
pbbam/BamRecord.h: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
848755: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848755
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pbdagcon
Version: 0~20160325+ds-1
Severity: serious
Tags: stretch sid
User: [email protected]
Usertags: qa-ftbfs-20161219 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0~20160325+ds=.
> -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11
> -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2
> -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata
> -I/usr/include/pbseq/hdf -MMD -MP
> -I/<<BUILDDIR>>/pbdagcon-0~20160325+ds/../DAZZ_DB
> -I/<<BUILDDIR>>/pbdagcon-0~20160325+ds/../DALIGNER -isystem.//third-party -c
> -o SimpleAligner.o SimpleAligner.cpp
> In file included from SimpleAligner.hpp:5:0,
> from SimpleAligner.cpp:8:
> /usr/include/pbseq/pbdata/DNASequence.hpp:15:29: fatal error:
> pbbam/BamRecord.h: No such file or directory
> #include <pbbam/BamRecord.h>
> ^
> compilation terminated.
> <builtin>: recipe for target 'SimpleAligner.o' failed
> make[2]: *** [SimpleAligner.o] Error 1
The full build log is available from:
http://aws-logs.debian.net/2016/12/19/pbdagcon_0~20160325+ds-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: pbdagcon
Source-Version: 0.3+20161121+ds-1
We believe that the bug you reported is fixed in the latest version of
pbdagcon, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Afif Elghraoui <[email protected]> (supplier of updated pbdagcon package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 21 Dec 2016 01:18:19 -0800
Source: pbdagcon
Binary: pbdagcon
Architecture: source
Version: 0.3+20161121+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Afif Elghraoui <[email protected]>
Description:
pbdagcon - sequence consensus using directed acyclic graphs
Closes: 848755
Changes:
pbdagcon (0.3+20161121+ds-1) unstable; urgency=medium
.
* New upstream revision (upstream git 87f393f)
* Include repository's submodules
* Base package versioning on program versions indicated in the source code
* Build with pbbam (Closes: #848755)
* Use pbseqlib metapackages as dependencies
* Build dazcon
* Activate build-time tests
* Use debhelper compat 10
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