Your message dated Fri, 13 Jan 2017 09:04:08 +0000 with message-id <e1crxmk-000fir...@fasolo.debian.org> and subject line Bug#850029: fixed in bioperl-run 1.7.1-3 has caused the Debian Bug report #850029, regarding libbio-perl-run-perl: fails to upgrade from 'jessie' - trying to overwrite /usr/share/man/man3/Bio::Tools::Run::StandAloneBlast.3pm.gz to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 850029: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=850029 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libbio-perl-run-perl Version: 1.7.1-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'jessie'. It installed fine in 'jessie', then the upgrade to 'stretch' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package libbio-perl-run-perl. Preparing to unpack .../libbio-perl-run-perl_1.7.1-1_all.deb ... Unpacking libbio-perl-run-perl (1.7.1-1) ... dpkg: error processing archive /var/cache/apt/archives/libbio-perl-run-perl_1.7.1-1_all.deb (--unpack): trying to overwrite '/usr/share/man/man3/Bio::Tools::Run::StandAloneBlast.3pm.gz', which is also in package libbio-perl-perl 1.6.924-1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libbio-perl-run-perl_1.7.1-1_all.deb cheers, Andreas
libbio-perl-perl=1.6.924-1_libbio-perl-run-perl=1.7.1-1.log.gz
Description: application/gzip
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--- Begin Message ---Source: bioperl-run Source-Version: 1.7.1-3 We believe that the bug you reported is fixed in the latest version of bioperl-run, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 850...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated bioperl-run package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 13 Jan 2017 08:25:26 +0100 Source: bioperl-run Binary: bioperl-run libbio-perl-run-perl Architecture: source all Version: 1.7.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: bioperl-run - BioPerl wrappers: scripts libbio-perl-run-perl - BioPerl wrappers: modules Closes: 850029 Changes: bioperl-run (1.7.1-3) unstable; urgency=medium . * s/Conflicts/Breaks/ Closes: #850029 Checksums-Sha1: 0b7339653951b8a40079ac15aa07bd9c05ac4999 2597 bioperl-run_1.7.1-3.dsc 3e29db96b56dd126ee2148668204e6a7ad073c68 12540 bioperl-run_1.7.1-3.debian.tar.xz 3ed0361ccf7d81b2a01518bed4f7e669ba13873c 44216 bioperl-run_1.7.1-3_all.deb b48d0d3e6704c3e5eeb1209da948e54c1efd1f64 10284 bioperl-run_1.7.1-3_amd64.buildinfo 9045bbf5aa54634a119e53db9a449f26d9c3b930 815884 libbio-perl-run-perl_1.7.1-3_all.deb Checksums-Sha256: c261be8fc9cbf4987e7e6a381c55ca7a06653f73ada55450db85a5731b2b95fa 2597 bioperl-run_1.7.1-3.dsc 2600a4fe7aec96598c536a1c309374a1dd150f26bf5c2529547fd5664415166e 12540 bioperl-run_1.7.1-3.debian.tar.xz 8b15dc98e362b6a73a75b7bd778c79b1e4d842d327867f3c71da70b0bf09c21f 44216 bioperl-run_1.7.1-3_all.deb 1e0ea60f0ed40213c4d848e3f276b2cf73ce71ec9d7216ddc0d5949308281678 10284 bioperl-run_1.7.1-3_amd64.buildinfo 224c3c6de868a69bb7d4777ec9d730540ca5f33e627739902d5754a9fd82e6da 815884 libbio-perl-run-perl_1.7.1-3_all.deb Files: 7c4a23d4786b7e16e7309277792a77b5 2597 science optional bioperl-run_1.7.1-3.dsc d22a94a04454e7900aa1f550c1c3ca53 12540 science optional bioperl-run_1.7.1-3.debian.tar.xz d2454c81bb9bc5693045aecf1ffc1491 44216 science optional bioperl-run_1.7.1-3_all.deb d281570f1590a6fd041b018eb2cedca1 10284 science optional bioperl-run_1.7.1-3_amd64.buildinfo a18e45c5344c86ef08464bb7dd922ed8 815884 perl optional libbio-perl-run-perl_1.7.1-3_all.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlh4gioRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHIBg/8D2uU/R73oqd55hOwL0MLVv1J1dnmJVad kVPXYzOkFZg3uP4I/M7S80uHoDpuyxYxXKM2Ql9WGBmpZLo4FPZ6u+A6syIsoICu fRUdN0WPMZzFrG6siGFfVS95/JGVq5KbjbmWeuvNponWdp1R8nVEeNjQ5L7PFNuu DiVpzsqATZJ/6iJNrjaHlIzKMeiFtentXGJSuOhomlQxI6J5uZrEEVH4QJt6UCK9 ZsVDKlj2lhhzJmfdSg8xRM37pJxpF6t8cb44MFbuBhRfilwoWek4UN5NEgXLAgZZ pgURutcMwtAAPZXU3kuMwDnH6d9cX7ahclOnxtgsaX6BZU48O4vFu4Ie1qWFr3fI AWB60uXEpA/vvezZQjXojG/titBv7O3u6YDXKQ2jttpXZiZJh3ysYyGtEBdMJ76Z ucucHm1C7zg8EMdbxGo7xhc++qeC0CMBUAKgZDRbSJocsY+olplMTVw6MPX4CuAV KnaiFkoEjcMOV2vVrZ5ctEevXEIboA/EwWt0lsnHsUMKyUOKKNGexV1EgJtz2dum a7klVhp8xFy5dsEq91BkiJsC/cVjL7w9BFsNU5BeMPI515vYxRjegdvUzC+mhPBi d5O2/Cct8mP5sJ0OAbaAl7oNW9XsN9fJ6OQo+PIk2VjZPzbVU6iCiutactOS1pbT UgxwegUTSQc= =H6fI -----END PGP SIGNATURE-----
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