Your message dated Mon, 30 Jan 2017 17:03:37 +0000 with message-id <[email protected]> and subject line Bug#853211: fixed in phyml 3:3.2.0+dfsg-5 has caused the Debian Bug report #853211, regarding phyml: Fails to use mpi to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 853211: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853211 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: phyml Severity: grave Justification: renders package unusable Hi, pyhml-mpi ends up with error *** An error occurred in MPI_Recv *** on communicator MPI_COMM_WORLD *** MPI_ERR_RANK: invalid rank *** MPI_ERRORS_ARE_FATAL: your MPI job will now abort The cause is a broken wrapper lacking an mpirun call. Kind regards Andreas. -- System Information: Debian Release: 8.7 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages phyml depends on: ii libc6 2.19-18+deb8u7 phyml recommends no packages. phyml suggests no packages.
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--- Begin Message ---Source: phyml Source-Version: 3:3.2.0+dfsg-5 We believe that the bug you reported is fixed in the latest version of phyml, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated phyml package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 30 Jan 2017 17:34:56 +0100 Source: phyml Binary: phyml Architecture: source Version: 3:3.2.0+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: phyml - Phylogenetic estimation using Maximum Likelihood Closes: 853211 Changes: phyml (3:3.2.0+dfsg-5) unstable; urgency=medium . * Fix wrapper to correctly use mpirun Closes: #853211 Checksums-Sha1: 32fde0ca78e99d4a98e274c5f00b8d15de120faa 2179 phyml_3.2.0+dfsg-5.dsc bec41aa0cf05d6c6e51a8de4b02134256e686219 16212 phyml_3.2.0+dfsg-5.debian.tar.xz Checksums-Sha256: dfb0c940d38fc6ad7f25051a161e808c6fc0f2af0f5a987ef70e13daa496f777 2179 phyml_3.2.0+dfsg-5.dsc af0feac73222a136c66350da711b10170240d67bfa1cf93170b4234283d938ab 16212 phyml_3.2.0+dfsg-5.debian.tar.xz Files: c7133cf02d00fc205cc06ce387385207 2179 science optional phyml_3.2.0+dfsg-5.dsc 48b30d48a02d72078d49734ddb55c3e7 16212 science optional phyml_3.2.0+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAliPbOIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEXjA//S9c4nbuPTq84vt4gMKXtB76o77sUH5jM 0fwEYQE+Z59t3ejn5s/tfbesFPRqV0qf+h6rYkTafp7O9LXOagRhCjWJwBriTjmg 3UHCDTWJxD0I99bmePlpTKtY7vPQAjTItgotxSh0SOLGSDV72cht2QRxU9L7cu2u MjwvfPyx3srI9agFicuk/ZU/ovhbb2oJCGuqtq5fJeF/X5LHLwPIr5jAtupycG1r VEkuR16ZZexNd1CiGkDRKdlnwDDwwAtrAba0U+tZnXxmPT8iWFYPbIKNXBG1jjNZ GxiLRIJ38YvKhA0UREdYEna29zKEgoe2V60GcSZXOdX/e0B2mjLbU2xPOr+Ip5bH v7LqEiVIxUwM9KX2XtyqgX3Ka7YUeyvVAxGWUy4JMOB10LfYKyDK+g+orQvkK+iU lOHgcsbHOTnR1/08k6BkTqbX7WbKVyFzS1N1z9h+hmVc1VT1jy75z/yrrsEtGN9p sFEz3tJXGJ6VMSrG25bxmkSP+Cog6UZYl4Xwqg73jyeb8tWHeWz/6UMZQ3pilOhK V4IgclDzO8JpNPhH45CrvvvD/kv0LtlCqkmjSsSyqyJw59Mww9U3rsiZrw8VtpTK z51TWDtN8Ou7ynUEwJNMkH+jD/k4uEw51bIHnRT9wCCf/uXXGxUwcM/hl0Wbwh2t LZBa81F6cDk= =NtRm -----END PGP SIGNATURE-----
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