Package: phyml Severity: grave Justification: renders package unusable Hi,
for optimisation reasons the bootstrap parameter (-b) is not matched exactly in phyml but rather adjusted to an optimized usage of processors by the following algorithm: (nBootstrap / nProzessors + 1) * nProzessors (see src/mpi_boot.c line 26 and 27). While this is OK for manual inspection of the results it breaks applications like seaview which is using the number of given bootstrap processes as 100% for a quality measure. If this number increases unexpectedly the measure will become above 100% which is no sensible result. As a workaround it would be needed to either determine the number of processors to fullfill the relation nBootstrap % nProzessors = 0 which results in unchanged number of bootstrap steps or simply set nProcessors=1 (disable multiprocessing at all). Kind regards Andreas. -- System Information: Debian Release: 8.7 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages phyml depends on: ii libc6 2.19-18+deb8u7 phyml recommends no packages. phyml suggests no packages.