Your message dated Wed, 01 Mar 2017 17:19:21 +0000 with message-id <[email protected]> and subject line Bug#856424: fixed in libvcflib 1.0.0~rc1+dfsg1-3 has caused the Debian Bug report #856424, regarding libvcflib-tools: vcflib cannot find its programs in /usr/lib/vcflib/binaries to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 856424: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=856424 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: libvcflib-tools Version: 1.0.0~rc1+dfsg1-1 Severity: grave Justification: renders package unusable Dear Maintainer, * What led up to the situation? I installed libvcflib-tools on testing/stretch. When I ran 'vcflib', I saw this: $ vcflib Usage: /usr/bin/vcflib <program> Existing programs are: ls: cannot access '/usr/lib/vcflib/bin': No such file or directory * What exactly did you do (or not do) that was effective (or ineffective)? For now, I created a symlink from /usr/lib/vcflib/binaries to /usr/lib/vcflib/bin. * What was the outcome of this action? Now vcflib can find its programs: $ vcflib Usage: /usr/bin/vcflib <program> Existing programs are: abba-baba LD plotHaps vcf2dag [...] It looks like the 'keep_R_files' patch from September 2016 changed the path to which programs are installed, while trying to keep the R scripts from being purged by 'make clean'. These R scripts reside in a 'scripts' directory upstream; maybe moving them in the Debian package as well, reverting BIN_DIR in the Makefile, and installing them from the scripts directory would fix this. -- System Information: Debian Release: 9.0 APT prefers testing APT policy: (500, 'testing'), (50, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.9.0-1-amd64 (SMP w/80 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages libvcflib-tools depends on: ii libc6 2.24-9 ii libdisorder0 0.0.2-1 ii libfastahack0 0.0+20160702-1 ii libgcc1 1:6.3.0-6 ii libgomp1 6.3.0-6 ii libhts1 1.3.2-2 ii libsmithwaterman0 0.0+20160702-1 ii libstdc++6 6.3.0-6 ii libtabixpp0 1.0.0-2 ii libvcflib1 1.0.0~rc1+dfsg1-1 ii zlib1g 1:1.2.8.dfsg-5 libvcflib-tools recommends no packages. libvcflib-tools suggests no packages. -- no debconf information
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--- Begin Message ---Source: libvcflib Source-Version: 1.0.0~rc1+dfsg1-3 We believe that the bug you reported is fixed in the latest version of libvcflib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libvcflib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 01 Mar 2017 15:43:05 +0100 Source: libvcflib Binary: libvcflib1 libvcflib-dev libvcflib-tools Architecture: source amd64 Version: 1.0.0~rc1+dfsg1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib1 - C++ library for parsing and manipulating VCF files Closes: 856424 Changes: libvcflib (1.0.0~rc1+dfsg1-3) unstable; urgency=medium . * Fix location of binary tools Closes: #856424 * Remove empty debian/upstream/metadata boilerplate Checksums-Sha1: b307f5bfae6558300bcdb405141482c81a6ebb30 2298 libvcflib_1.0.0~rc1+dfsg1-3.dsc f833f8e322c32a49d398929890cbac2d73cb66b3 10504 libvcflib_1.0.0~rc1+dfsg1-3.debian.tar.xz 58353abf6afb42050000de79f5409e55707b07e8 14632 libvcflib-dev_1.0.0~rc1+dfsg1-3_amd64.deb d9f83e3b77b40ab0537433761363d373feff5e6f 82846 libvcflib-tools-dbgsym_1.0.0~rc1+dfsg1-3_amd64.deb 56b2c735f39e6d822b0c5f825fb2fe22449a0880 620134 libvcflib-tools_1.0.0~rc1+dfsg1-3_amd64.deb d052c947799afa10e6cc902e8cde89838850fc12 841838 libvcflib1-dbgsym_1.0.0~rc1+dfsg1-3_amd64.deb 73f4e412f796f21ab5c5cca42fb51361e135a0a8 130456 libvcflib1_1.0.0~rc1+dfsg1-3_amd64.deb 627ae95aa2c9f65f483fd37f560e6332cff51de8 7179 libvcflib_1.0.0~rc1+dfsg1-3_amd64.buildinfo Checksums-Sha256: b26e2aedb3ed4383e604e98743e8925fcd2e097e08163b7a875485109a398b8c 2298 libvcflib_1.0.0~rc1+dfsg1-3.dsc f0044af696c100ddb8990768eb221963da448e9c4bdfc03c0ddf6ef994c70eaa 10504 libvcflib_1.0.0~rc1+dfsg1-3.debian.tar.xz f1deaa677d7aaaa89a5a458f333b68445246bc606358757ffd8eaa09694f92b5 14632 libvcflib-dev_1.0.0~rc1+dfsg1-3_amd64.deb 918b30eec8eb0e6ffb5857e8b8f8567ec505c5526e04ade404b29feeb1286ebc 82846 libvcflib-tools-dbgsym_1.0.0~rc1+dfsg1-3_amd64.deb 9d13f43f75d6cdb2cafbfc2054ace66a0fcfe3d7d0745d579fb62fda3157bfed 620134 libvcflib-tools_1.0.0~rc1+dfsg1-3_amd64.deb b0b4edaefc840718315bd680a10cd419c56c8ca9b79079422821c26799b5b031 841838 libvcflib1-dbgsym_1.0.0~rc1+dfsg1-3_amd64.deb bb8c9f46ab18ce70621be013e3eb450cc648bb8ac8b380036a19bc147f303d2a 130456 libvcflib1_1.0.0~rc1+dfsg1-3_amd64.deb 127e451c0bc965420d241a2c14f8339a929bf670daee74105f807891ffc27c32 7179 libvcflib_1.0.0~rc1+dfsg1-3_amd64.buildinfo Files: b8e6c0c38fba5c0e9c1e5b107c8533e9 2298 science optional libvcflib_1.0.0~rc1+dfsg1-3.dsc cbb4cd15a89d5a1785d76dd35792ec2a 10504 science optional libvcflib_1.0.0~rc1+dfsg1-3.debian.tar.xz 243374297750ead83f04db2b582e43cb 14632 libdevel optional libvcflib-dev_1.0.0~rc1+dfsg1-3_amd64.deb 2d7b497733848992443e77bc89482571 82846 debug extra libvcflib-tools-dbgsym_1.0.0~rc1+dfsg1-3_amd64.deb c96dc54b5d422a7ce3f78af9cd43c782 620134 science optional libvcflib-tools_1.0.0~rc1+dfsg1-3_amd64.deb 418c85f8fb3e3faebd4b678a11cf7464 841838 debug extra libvcflib1-dbgsym_1.0.0~rc1+dfsg1-3_amd64.deb fc9375694074ec7da3b6b4c5c631bde0 130456 libs optional libvcflib1_1.0.0~rc1+dfsg1-3_amd64.deb e5f50bb57ad8c229c1fb6a2041fe6270 7179 science optional libvcflib_1.0.0~rc1+dfsg1-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAli2/rgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH4IQ//R/myI3wZ20pJXJ/nS3fnrJoz0gIxKhT3 QotMM77blphLlXecb50UfpFSzSgziWbDZ1dBnWC5EphOpkmdY8U1FxGKJTi6gq0s s0dWaMtf4ZgF8GKfr5mtsWQxW0qDWyEbdYC0HJeY+9Qnmgki30ZoCp6YRJblzIMu /LKC6uRg7yduAkaaaQbUanggv/esHJ3WWkgrta2q5ZA0EwTHs0DwTKpI96WXcBHm YcsLwcoyNYGQwJ0DPBtKakESshMlrTllbJT2YllyH6dUqGZerFDoCI13kPP/Wsd6 OyBmYM+LsnPzREUPC5XRiNmV/hEL9Up7lyddGFL4Wu6nv2KfUkuVgJIQu4dOrjzF pP8kPe3J2bY5iI6eNvYEGHgZiayCnbD+KDzaBOV/8+NpRmSgj6Y11ZIt7nPBYxMz mldy1N/M52pUAClWyRL6H7k7i/qiLlQNEpqu2l1Zp/pkFJgUatgRwYMGjXH4drw+ sZpt6sz8/mKHljdVbckrvUuBEAu3jNprKk3DymZzsmKJ94Ly3S87e08zARn3QRC0 TUGSd2F9doEo+xJymG2fJs2PFAnKjGxrY25jDYsIhyb3olz+GapyqguycCrcB7u7 PkReX4EdJVDkfdDfeLPzx9HzF3R9xApj3Mq/g4Nn+IRjQnfRE2TfRDQcxfmlvX1T eA/xIIfz97Y= =BRuk -----END PGP SIGNATURE-----
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