Your message dated Sat, 01 Apr 2017 21:04:53 +0000 with message-id <[email protected]> and subject line Bug#859257: fixed in ngs-sdk 1.3.0-2 has caused the Debian Bug report #859257, regarding libngs-sdk-dev: installs .a files to the incorrect directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 859257: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859257 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: libngs-sdk-dev Version: 1.2.3-3 Severity: serious Tags: patch Hi Maintainer .a files are installed to the incorrect directory (e.g. /usr/lib/i686-linux-gnu/ instead of /usr/lib/i386-linux-gnu/) , as can be seen in the following excerpt from a recent buildlog [1]: libngs-sdk-dev_1.3.0-1_i386.deb ─────────────────────────────── new debian package, version 2.0. size 99736 bytes: control archive=3479 bytes. 1035 bytes, 24 lines control 6887 bytes, 98 lines md5sums Package: libngs-sdk-dev Source: ngs-sdk Version: 1.3.0-1 Architecture: i386 ... drwxr-xr-x root/root 0 2016-11-09 07:54 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-09 07:54 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2016-11-09 07:54 ./usr/lib/i386-linux-gnu/libngs-sdk.so -> libngs-sdk.so.1 drwxr-xr-x root/root 0 2016-11-09 07:54 ./usr/lib/i686-linux-gnu/ lrwxrwxrwx root/root 0 2016-11-09 07:54 ./usr/lib/i686-linux-gnu/libngs-adapt-c++-static.a -> libngs-adapt-c++.a This causes at least sra-sdk to FTBFS on i386 [2] with the following error: checking for ngs-sdk package... includes... /usr libraries... checking /usr/lib/i386-linux-gnu/libngs-c++.a checking /usr/lib32/libngs-c++.a checking /usr/linux/gcc/i386/dbg/lib/libngs-c++.a no libraries... checking /«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libngs-c++.a checking /«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/lib32/libngs-c++.a checking /«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/linux/gcc/i386/dbg/lib/libngs-c++.a no not found /«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/ngs-sdk libraries... checking /usr/lib/i386-linux-gnu/libngs-c++.a checking /usr/lib32/libngs-c++.a checking /usr/linux/gcc/i386/dbg/lib/libngs-c++.a no ngs-sdk: includes: /usr/include; libs: ; ilibs: not needed configure: error: required ngs-sdk package not found. debian/rules:24: recipe for target 'override_dh_auto_configure' failed The following patch lets the .a files be installed to the correct multiarch directory: --- a/debian/rules +++ b/debian/rules @@ -9,6 +9,7 @@ OS := $(shell dpkg-architecture -qDEB_BUILD_ARCH_OS) CPU := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU) BUILDTYPE := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE) +MULTIARCH := $(shell dpkg-architecture -qDEB_HOST_MULTIARCH) # since build-results are not ending up in the proper dir its saver to use "*" instead of "$(CPU)" SODIR := $(DEBPKGNAME)/$(BUILDTYPE)/$(DEBPKGNAME)/$(OS)/gcc/* @@ -61,8 +62,8 @@ --devunversioned \ --exclude-a \ --exclude-la \ - --movedev "$(SODIR)/rel/lib/*.a*" usr/lib/$(BUILDTYPE) \ - --movedev "$(SODIR)/rel/ilib/*.a" usr/lib/$(BUILDTYPE) \ + --movedev "$(SODIR)/rel/lib/*.a*" usr/lib/$(MULTIARCH) \ + --movedev "$(SODIR)/rel/ilib/*.a" usr/lib/$(MULTIARCH) \ --movedev ngs-sdk/ngs usr/include \ $(SODIR)/rel/lib/libngs-sdk.so Regards Graham [1] https://buildd.debian.org/status/fetch.php?pkg=ngs-sdk&arch=i386&ver=1.3.0-1&stamp=1478684848&raw=0 [2] https://buildd.debian.org/status/fetch.php?pkg=sra-sdk&arch=i386&ver=2.8.1-2%2Bdfsg-1&stamp=1485249305&raw=0
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--- Begin Message ---Source: ngs-sdk Source-Version: 1.3.0-2 We believe that the bug you reported is fixed in the latest version of ngs-sdk, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated ngs-sdk package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 01 Apr 2017 22:33:07 +0200 Source: ngs-sdk Binary: libngs-sdk1 libngs-sdk-dev libngs-java python-ngs python3-ngs Architecture: source amd64 Version: 1.3.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk1 - Next Generation Sequencing language Bindings python-ngs - Next Generation Sequencing language Bindings (Python bindings) python3-ngs - Next Generation Sequencing language Bindings (Python3 bindings) Closes: 859257 Changes: ngs-sdk (1.3.0-2) unstable; urgency=medium . * Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE (thanks for the patch to Graham Inggs <[email protected]>) Closes: #859257 Checksums-Sha1: e3f650d1099db6082c59ff2097de3772262e1ffc 2358 ngs-sdk_1.3.0-2.dsc 4f85ebdea0cdb851519e12e0a85d1e3722a73d56 11460 ngs-sdk_1.3.0-2.debian.tar.xz a965260b2b62931e993585157167dfac2a2df1ac 71056 libngs-java_1.3.0-2_amd64.deb 7ccbc7ed3ba79a664defec27c8c632ec24b80aa8 92380 libngs-sdk-dev_1.3.0-2_amd64.deb 40e781dd1bc771d07026405a25a6c5c8daa73a33 9536 libngs-sdk1-dbgsym_1.3.0-2_amd64.deb 916ea7d5b4b221df306b0d230e6ed80818479a52 51210 libngs-sdk1_1.3.0-2_amd64.deb f83855d2b6fddd25e1af7ee719c4fea05e1e70f8 12428 ngs-sdk_1.3.0-2_amd64.buildinfo 5f068c40fcadd744cba479e2d3513b3d021b0777 17982 python-ngs_1.3.0-2_amd64.deb f6dc4ff79be2eb4c2cfa2d2183d64172148fc493 18054 python3-ngs_1.3.0-2_amd64.deb Checksums-Sha256: f91a77d448b3de7735c77f3733d02738257726eb975053583356af4e5cd7d6d2 2358 ngs-sdk_1.3.0-2.dsc 238edb86eec79d8ad79b07c3d01997715ca0df9fa0c94bd4dfa1bbe5e525d628 11460 ngs-sdk_1.3.0-2.debian.tar.xz 193f1f55bed25f12eb984b7a53e0e03f7861242506bb97b14cb4ee9c92790cf1 71056 libngs-java_1.3.0-2_amd64.deb 9f80d8119c0edf453a85df5379d6bd181d0dcec0ac2be6e3c4cf304b2c07eaf1 92380 libngs-sdk-dev_1.3.0-2_amd64.deb 645d4fe75b06ca936c55ddc9f7a9bb6c2edf4a5ccf1763d63b897706d0625a57 9536 libngs-sdk1-dbgsym_1.3.0-2_amd64.deb fea1a3232f9c966f5b7bb9f291b196c2a54365f6a34bfe25e592ebdd43abb3ff 51210 libngs-sdk1_1.3.0-2_amd64.deb 5d344787fae920825f431ff85e96ed11139ab07a0efade11d1e9858432cc441c 12428 ngs-sdk_1.3.0-2_amd64.buildinfo 705dfe4ca1527f70cad769375dd8b4d8ddbcfd4a56acd543946524444ce5c9c3 17982 python-ngs_1.3.0-2_amd64.deb ac9915f2357c3eac5e424d699ccf7777b37dd0ad7425531a27fc25116ae58e87 18054 python3-ngs_1.3.0-2_amd64.deb Files: afe028119fd22b5214fe432faac0a750 2358 science optional ngs-sdk_1.3.0-2.dsc c3612c88f0ca45631cc47afd848b6889 11460 science optional ngs-sdk_1.3.0-2.debian.tar.xz 8b98a5f683ea8fbf0b74647f5cdb6f6d 71056 java optional libngs-java_1.3.0-2_amd64.deb d8f2033f18e08553800ca598ccc3eabb 92380 libdevel optional libngs-sdk-dev_1.3.0-2_amd64.deb 510396ca28e49c3bcebd48312188b870 9536 debug extra libngs-sdk1-dbgsym_1.3.0-2_amd64.deb e028ffc9458150d6fe13fa37dad6c08a 51210 libs optional libngs-sdk1_1.3.0-2_amd64.deb c246896435cb20d3ef8b2ffeabd8e976 12428 science optional ngs-sdk_1.3.0-2_amd64.buildinfo c8d22d7d9934c0a8dad5f5f40f948c05 17982 python optional python-ngs_1.3.0-2_amd64.deb f38d9ce833cb61617f8236e512af2958 18054 python optional python3-ngs_1.3.0-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAljgD2URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEqzw//ZWHJiQ/AQ9640CsC5IdYvChO08SpsuM3 vfuNXC1+5q+Tu8L62HtBThqtVA+PK9LklnogrLfMDJWgG2UlO+aZnvwayyBp0Y6k Fr3NblbXaDbzbQw4N2V+haNGRO+YCU07D/ZSDs7SYWnMGLB/xNY/nuPavOJuZrPr ezDRv6nY/AfXLxFhg9rpSFg3xP2tC8ml0F9fIbV6cYftv4gl2/MAZ6xqJ++5fAFH yjDY5gYBzZ/p5LYg/X/4zId49kG39UdYPlef+PLTx+Cs9GB26K4zBmfUOQg4elah edVHt3tRAGlBQXir9bvQYmXpAIGfUNSMprrsQNwy/apYnqiCjB1Le7+/ZVZ7Kxhr rEEWX7mxjW6ElYtq0obBrX+yjm6x+L4Jy4Z5A2Gq3qfPlvqy1TzW+Uq8cm9cGMwP UaAuumAHF3nL9tG+DoNstSUYp7s4v0CvvOfSldlKiJjZqpDlgfE5XrYa6AO8oCIv ZxFQa5AO5AH0NAHQTsmHuFFQ3GwKmTUti9UDwRwU4WyNoFis6IDQ9zyMdTHjz8JD fbHgNyYphSg28yKS1kE1YnSOMiSfZhDU77I0lpUCvGR4SOeNXfuXsQwSIl3EOwQ0 ArZkCRhXKc8bKhamlCk1JMuLX7XqJ8CIEy3k5hgrCVqln5t4We2/rn1T6sVkwI6g 8EoaPK57Tqk= =XlK/ -----END PGP SIGNATURE-----
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