Your message dated Sat, 01 Apr 2017 21:04:53 +0000
with message-id <e1cuqcb-000b2j...@fasolo.debian.org>
and subject line Bug#859257: fixed in ngs-sdk 1.3.0-2
has caused the Debian Bug report #859257,
regarding libngs-sdk-dev: installs .a files to the incorrect directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
859257: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859257
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libngs-sdk-dev
Version: 1.2.3-3
Severity: serious
Tags: patch
Hi Maintainer
.a files are installed to the incorrect directory (e.g.
/usr/lib/i686-linux-gnu/ instead of /usr/lib/i386-linux-gnu/) , as can
be seen in the following excerpt from a recent buildlog [1]:
libngs-sdk-dev_1.3.0-1_i386.deb
───────────────────────────────
new debian package, version 2.0.
size 99736 bytes: control archive=3479 bytes.
1035 bytes, 24 lines control
6887 bytes, 98 lines md5sums
Package: libngs-sdk-dev
Source: ngs-sdk
Version: 1.3.0-1
Architecture: i386
...
drwxr-xr-x root/root 0 2016-11-09 07:54 ./usr/lib/
drwxr-xr-x root/root 0 2016-11-09 07:54 ./usr/lib/i386-linux-gnu/
lrwxrwxrwx root/root 0 2016-11-09 07:54
./usr/lib/i386-linux-gnu/libngs-sdk.so -> libngs-sdk.so.1
drwxr-xr-x root/root 0 2016-11-09 07:54 ./usr/lib/i686-linux-gnu/
lrwxrwxrwx root/root 0 2016-11-09 07:54
./usr/lib/i686-linux-gnu/libngs-adapt-c++-static.a ->
libngs-adapt-c++.a
This causes at least sra-sdk to FTBFS on i386 [2] with the following error:
checking for ngs-sdk package...
includes... /usr
libraries...
checking /usr/lib/i386-linux-gnu/libngs-c++.a
checking /usr/lib32/libngs-c++.a
checking /usr/linux/gcc/i386/dbg/lib/libngs-c++.a
no
libraries...
checking
/«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libngs-c++.a
checking /«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/lib32/libngs-c++.a
checking
/«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/linux/gcc/i386/dbg/lib/libngs-c++.a
no
not found /«BUILDDIR»/sra-sdk-2.8.1-2+dfsg/debian/tmp/usr/ngs-sdk
libraries...
checking /usr/lib/i386-linux-gnu/libngs-c++.a
checking /usr/lib32/libngs-c++.a
checking /usr/linux/gcc/i386/dbg/lib/libngs-c++.a
no
ngs-sdk: includes: /usr/include; libs: ; ilibs: not needed
configure: error: required ngs-sdk package not found.
debian/rules:24: recipe for target 'override_dh_auto_configure' failed
The following patch lets the .a files be installed to the correct
multiarch directory:
--- a/debian/rules
+++ b/debian/rules
@@ -9,6 +9,7 @@
OS := $(shell dpkg-architecture -qDEB_BUILD_ARCH_OS)
CPU := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
BUILDTYPE := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+MULTIARCH := $(shell dpkg-architecture -qDEB_HOST_MULTIARCH)
# since build-results are not ending up in the proper dir its saver
to use "*" instead of "$(CPU)"
SODIR := $(DEBPKGNAME)/$(BUILDTYPE)/$(DEBPKGNAME)/$(OS)/gcc/*
@@ -61,8 +62,8 @@
--devunversioned \
--exclude-a \
--exclude-la \
- --movedev "$(SODIR)/rel/lib/*.a*" usr/lib/$(BUILDTYPE) \
- --movedev "$(SODIR)/rel/ilib/*.a" usr/lib/$(BUILDTYPE) \
+ --movedev "$(SODIR)/rel/lib/*.a*" usr/lib/$(MULTIARCH) \
+ --movedev "$(SODIR)/rel/ilib/*.a" usr/lib/$(MULTIARCH) \
--movedev ngs-sdk/ngs usr/include \
$(SODIR)/rel/lib/libngs-sdk.so
Regards
Graham
[1]
https://buildd.debian.org/status/fetch.php?pkg=ngs-sdk&arch=i386&ver=1.3.0-1&stamp=1478684848&raw=0
[2]
https://buildd.debian.org/status/fetch.php?pkg=sra-sdk&arch=i386&ver=2.8.1-2%2Bdfsg-1&stamp=1485249305&raw=0
--- End Message ---
--- Begin Message ---
Source: ngs-sdk
Source-Version: 1.3.0-2
We believe that the bug you reported is fixed in the latest version of
ngs-sdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 859...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated ngs-sdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 01 Apr 2017 22:33:07 +0200
Source: ngs-sdk
Binary: libngs-sdk1 libngs-sdk-dev libngs-java python-ngs python3-ngs
Architecture: source amd64
Version: 1.3.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libngs-java - Next Generation Sequencing language Bindings (Java bindings)
libngs-sdk-dev - Next Generation Sequencing language Bindings (development)
libngs-sdk1 - Next Generation Sequencing language Bindings
python-ngs - Next Generation Sequencing language Bindings (Python bindings)
python3-ngs - Next Generation Sequencing language Bindings (Python3 bindings)
Closes: 859257
Changes:
ngs-sdk (1.3.0-2) unstable; urgency=medium
.
* Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE
(thanks for the patch to Graham Inggs <gin...@debian.org>)
Closes: #859257
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