Your message dated Sat, 01 Apr 2017 21:18:49 +0000 with message-id <e1cuqq5-000coo...@fasolo.debian.org> and subject line Bug#859260: fixed in ncbi-vdb 2.8.1+dfsg-2 has caused the Debian Bug report #859260, regarding libncbi-vdb-dev: installs .a files to the incorrect directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 859260: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859260 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libncbi-vdb-dev Version: 2.8.0+dfsg-1 Severity: serious Tags: patch Hi Maintainer Similar to #859257 in libngs-sdk-dev, .a files are installed to the incorrect directory (e.g. /usr/lib/i686-linux-gnu/ instead of /usr/lib/i386-linux-gnu/). The attached patch use s DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE to install .a files to the correct multiarch directory. Regards Graham--- a/debian/rules +++ b/debian/rules @@ -10,7 +10,7 @@ OS := $(shell dpkg-architecture -qDEB_BUILD_ARCH_OS) CPU := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU) -BUILDTYPE := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE) +MULTIARCH := $(shell dpkg-architecture -qDEB_HOST_MULTIARCH) # since build-results are not ending up in the proper dir its saver to use "*" instead of "$(CPU)" SODIR := $(DEBPKGNAME)/$(DEBPKGNAME)/$(OS)/gcc VDB_ARCH := $(word 1, $(subst -, ,$(DEB_HOST_MULTIARCH))) @@ -25,7 +25,7 @@ if [ -e ngs-sdk/Makefile.config.$(OS).$(CPU) ] ; then \ dh_auto_clean ; \ fi - rm -rf $(DEBPKGNAME)/$(BUILDTYPE) + rm -rf $(DEBPKGNAME)/$(MULTIARCH) override_dh_auto_configure: # that's no standard configure script lacking support of default options @@ -34,7 +34,7 @@ # so we need to go with patches. The options are specified anyway. ln -s /usr/lib/jvm/default-java/include/jni.h libs/ngs-jni ln -s /usr/lib/jvm/default-java/include/linux/jni_md.h libs/ngs-jni - ./configure --build=$(BUILDTYPE) --prefix=/usr --build-prefix=$(CURDIR)/debian/tmp/usr --with-ngs-sdk-prefix=/usr --with-debug --with-ngs-java-prefix=/usr/share/java + ./configure --build=$(MULTIARCH) --prefix=/usr --build-prefix=$(CURDIR)/debian/tmp/usr --with-ngs-sdk-prefix=/usr --with-debug --with-ngs-java-prefix=/usr/share/java # no idea how to convince configure script to use the correct include dir so patching result afterwards sed -i 's?HDF5_INCDIR = /usr/include?&/hdf5/serial?' build/Makefile.config* @@ -61,16 +61,16 @@ --override s/libmbedcrypto0-dev/libmbedtls-dev/ \ --override s/libmbedtls10-dev/libmbedtls-dev/ \ --override s/libmbedx509-0-dev/libmbedtls-dev/ \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-ngs-c++.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp-norsrc.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkff.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libktst.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxfs.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxml.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libload.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui.a usr/lib/$(BUILDTYPE) \ - --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui_cpp.a usr/lib/$(BUILDTYPE) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-ngs-c++.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp-norsrc.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkff.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libktst.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxfs.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxml.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libload.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui.a usr/lib/$(MULTIARCH) \ + --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui_cpp.a usr/lib/$(MULTIARCH) \ --movedev interfaces usr/include \ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-vdb.so mv debian/libncbi-vdb-dev/usr/include/interfaces debian/libncbi-vdb-dev/usr/include/$(DEBPKGNAME)
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--- Begin Message ---Source: ncbi-vdb Source-Version: 2.8.1+dfsg-2 We believe that the bug you reported is fixed in the latest version of ncbi-vdb, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 859...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated ncbi-vdb package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 01 Apr 2017 22:50:01 +0200 Source: ncbi-vdb Binary: libncbi-vdb2 libncbi-vdb-dev libkdf5-2 libkdf5-dev libncbi-wvdb2 libncbi-wvdb-dev Architecture: source Version: 2.8.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libkdf5-2 - hdf5 access to data in the INSDC Sequence Read Archives libkdf5-dev - hdf5 access to data in the INSDC Sequence Read Archives (devel) libncbi-vdb-dev - libraries for using data in the INSDC Sequence Read Archives (dev libncbi-vdb2 - libraries for using data in the INSDC Sequence Read Archives libncbi-wvdb-dev - virtual layer update modul of ncbi-vdb library (devel) libncbi-wvdb2 - virtual layer update modul of ncbi-vdb library Closes: 859260 Changes: ncbi-vdb (2.8.1+dfsg-2) unstable; urgency=medium . * Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE (thanks for the patch to Graham Inggs <gin...@debian.org>) Closes: #859260 Checksums-Sha1: 2f6a614586ca2b4f22d8ca863b5d35db6c09ab84 2441 ncbi-vdb_2.8.1+dfsg-2.dsc e4a645d91264d107c62864590c53a6d97a1bcefd 13668 ncbi-vdb_2.8.1+dfsg-2.debian.tar.xz 677f21370723268e38275144f0b024437f725d5d 13820 ncbi-vdb_2.8.1+dfsg-2_source.buildinfo Checksums-Sha256: c8762a7b27935db5ab61b5b090c45231c3fd2914544e34c8e2270ed1e242e996 2441 ncbi-vdb_2.8.1+dfsg-2.dsc ee734aaf753b82d314afe89d1e0d743c995e41460e60a254801b26ba2c7526c5 13668 ncbi-vdb_2.8.1+dfsg-2.debian.tar.xz 1f44efb630a42aa5c35dad875b8af886094cd19fe0bd1333986fe8fa420f72ea 13820 ncbi-vdb_2.8.1+dfsg-2_source.buildinfo Files: e1ac3bdf6746d55ab0c004bccd361f80 2441 science optional ncbi-vdb_2.8.1+dfsg-2.dsc 82f04e6d64e277778c3f92269d0be156 13668 science optional ncbi-vdb_2.8.1+dfsg-2.debian.tar.xz 861637c60847ded96e5954db90a8b1cc 13820 science optional ncbi-vdb_2.8.1+dfsg-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAljgFJMOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGfqQ//Vi9+e2rMmnH6bPZAwpf1EaT711ENkX2YdsTK CyHXlBPSMDw+aaSZgZ0QEYVs8SRgeoy4/BHz2884GGg8vUDrb3v9LWzTInhHmX8w f3fyi1YOXq6KO1sBRwdpK7vwSdREGUtWml4JytMbdryH02rlerNHC9kwaWUIbv2u Tzi9MIBEBmdIV5cT55dfFxXsPXPbfJzqbsBQPzD9FM56phK7TAY1DIXTnl9FhGeP s/+1JtM5HmTxfidUSVbVP2KN5apEuzWwYycEAZ9p1nlOO7pUgKFmUcXs/LXxk/28 yIENtXwroLcI0xhf4/fTbv8uDU2cUeDwCH7xZhVf23454mTzcpKCwsN/UyXz+pL2 byLYVOqIdQvUr9kcG2H3YP+m+OgEcBqoOjwDBlOxGtPQZc79VYmCg/Ih6pWgG29Z RM3FM4Rqov1KZJUOMXTLmT3YJfRyWMa/U5LGK4lIPZK5KyzWMUsUIqfm0HEG3OkR iMfDou8vLlNHu3uinZtvlFWm/ymZjvMgD/9/JJSyDGAOvwpyeoNj5IPL5msu8Rij nk6veJ9vDKwmPvsfw4lZyvhOe+ZWq8I2H6QNvWID2jBHlIMJrc/IuZJGYIhIyzd1 /HY9vKw+yXckjxx74/SZf6JKctR7gXsHsYAcMP6FgS7ejRwS5fFq+W0lT9FkxIrc EUJgugc= =bArN -----END PGP SIGNATURE-----
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