forwarded 859111 https://github.com/sanger-pathogens/ariba/issues/170 tags 859111 upstream thanks
Hi all, > On Thu, Mar 30, 2017 at 06:20:16PM +0300, Adrian Bunk wrote: >> Control: retitle -1 ariba FTBFS with bowtie2 2.3.1-1 > [...] >> This is actually not related to the ariba version but to the bowtie2 version, >> ariba 2.6.1+ds-1 in stretch builds with the stretch bowtie2 2.3.0-2 but >> FTBFS with the sid bowtie2 2.3.1-1 > > Do we already know whether the newer upstream version fixes this? No, it doesn't. I just tested it. Given that the test failure seems to be caused by differences between result and reference, and bowtie2 2.3.1 introduced different default values for one of the parameters [1], it might be likely that it's connected to that. I have contacted upstream [2] -- they are usually quite responsive. Cheers Sascha [1] http://bowtie-bio.sourceforge.net/bowtie2/index.shtml [2] https://github.com/sanger-pathogens/ariba/issues/170
