--- Begin Message ---
Source: ariba
Version: 2.7.1+ds-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
ariba fails to build from source in unstable/amd64:
[…]
======================================================================
FAIL: Test run_bowtie2 unsorted
----------------------------------------------------------------------
Traceback (most recent call last):
File "«BUILDDIR»/ariba/tests/mapping_test.py", line 61, in test_run_bowtie2
self.assertListEqual(expected, got)
AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)],
'AGCCCTC[857 chars]AT')] != [('1', 153, 'ref', 30, [(0, 25)],
'AGGATACAGATCT[794 chars]AT')]
First differing element 0:
('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC')
('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT')
- [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC'),
- ('1', 147, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'),
? ^ ^^
+ [('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'),
? ^ ^^
+ ('1', 69, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC'),
- ('2', 99, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'),
? ^^
+ ('2', 73, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'),
? ^^
- ('2', 147, 'ref', 170, [(0, 20), (4, 5)], 'TCCACCTTAGCTAAGCGCAGACTCG'),
+ ('2', 133, None, 124, [], 'CGAGTCTGCGCTTAGCTAAGGTGGA'),
('3', 73, 'ref', 86, [(0, 25)], 'TCGGGTCTGTACAAGGACGGATGGT'),
('3', 133, None, 86, [], 'CGTACTGACTGACTGACGTACTGCA'),
('4', 99, 'ref', 55, [(0, 25)], 'CCGCCGGGAAGTCCTTCTGTCGTGC'),
('4', 147, 'ref', 136, [(0, 25)], 'GGCTTACCATAGAGGTACACTAAAA'),
- ('5', 99, 'ref', 0, [(4, 2), (0, 23)], 'CCTCCACAGGATGGTGGTATACCTG'),
? ^^ ^^ -- ^ ---------------
+ ('5', 77, None, -1, [], 'CCTCCACAGGATGGTGGTATACCTG'),
? ^^ ^^^ ^^
- ('5', 147, 'ref', 166, [(0, 24), (4, 1)], 'TTCATCCACCTTAGCTAAGCGCAGA'),
+ ('5', 141, None, -1, [], 'TCTGCGCTTAGCTAAGGTGGATGAA'),
('6', 77, None, -1, [], 'CAGTTGCATGACGTCATGCAGTCAT'),
('6', 141, None, -1, [], 'AATGAGTATGATGAGTAATGGTATG'),
('7', 99, 'ref', 56, [(4, 1), (0, 23), (4, 1)],
'ACGCCGGGAAGTCCTTCTGTCGTGT'),
('7', 147, 'ref', 136, [(0, 24), (4, 1)], 'GGCTTACCATAGAGGTACACTAAAT')]
======================================================================
FAIL: Test run_bowtie2 sorted
----------------------------------------------------------------------
Traceback (most recent call last):
File "«BUILDDIR»/ariba/tests/mapping_test.py", line 102, in
test_run_bowtie2_and_sort
self.assertListEqual(expected, got)
AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)],
'AGCCCTC[857 chars]TG')] != [('1', 69, None, 30, [],
'AGCCCTCCACAGGATGGTGGTA[794 chars]TG')]
First differing element 0:
('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC')
('1', 69, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC')
Diff is 1432 characters long. Set self.maxDiff to None to see it.
----------------------------------------------------------------------
Ran 317 tests in 59.987s
FAILED (failures=2)
debian/rules:23: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1
make[1]: Leaving directory '«BUILDDIR»'
debian/rules:10: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
ariba.2.7.1+ds-1.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
