Your message dated Sun, 18 Jun 2017 19:37:43 +0000 with message-id <e1dmg11-0006cw...@fasolo.debian.org> and subject line Bug#865008: fixed in samtools 1.4.1-1 has caused the Debian Bug report #865008, regarding samtools FTBFS with htslib 1.4.1-2: error: conflicting types for 'errmod_t' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 865008: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865008 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: samtools Version: 1.3.1-3 Severity: serious Tags: buster sid https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/samtools.html https://buildd.debian.org/status/fetch.php?pkg=samtools&arch=mips&ver=1.3.1-3&stamp=1497794431&raw=0 ... gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf_indel.o bam2bcf_indel.c In file included from bam2bcf.h:31:0, from bam2bcf_indel.c:32: errmod.h:36:3: error: conflicting types for 'errmod_t' } errmod_t; ^~~~~~~~ In file included from /usr/include/htslib/sam.h:31:0, from bam2bcf_indel.c:31: /usr/include/htslib/hts.h:659:25: note: previous declaration of 'errmod_t' was here typedef struct errmod_t errmod_t; ^~~~~~~~ ...
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--- Begin Message ---Source: samtools Source-Version: 1.4.1-1 We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 865...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 18 Jun 2017 21:11:09 +0200 Source: samtools Binary: samtools samtools-test Architecture: source amd64 all Version: 1.4.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Closes: 865008 Changes: samtools (1.4.1-1) unstable; urgency=medium . * New upstream version Closes: #865008 Checksums-Sha1: 4eded9efe285b1b813b98be8489076df883cc493 2232 samtools_1.4.1-1.dsc 9434998ce15ea78e817842f8b7f6831fd08d7fdf 3988842 samtools_1.4.1.orig.tar.gz 5396d0b2e0bc70975a718019e59d70d0fb7fc1a8 20824 samtools_1.4.1-1.debian.tar.xz d89d04432348f6dae2c3e375b6423f9b2fa2ee67 494734 samtools-dbgsym_1.4.1-1_amd64.deb 63cf45981f882108db65283439e0ac5e1f26f1c5 2011022 samtools-test_1.4.1-1_all.deb e4bda78849eaff076265b523f9352a470171ee8f 6834 samtools_1.4.1-1_amd64.buildinfo 0b82ccb408eba9607a71d7794a40bbc1b5be8610 254016 samtools_1.4.1-1_amd64.deb Checksums-Sha256: 59399fa573e51c3b321cfcc430121364c1f7d0862355435220b75b202f63e2f5 2232 samtools_1.4.1-1.dsc a0eece62194121884be4ed418b2137db7bb179d6410ed8071751e0eeec49b3b8 3988842 samtools_1.4.1.orig.tar.gz 846827d3e31483d3054f57eccc4161f4c69d32511acb7fdcadeae5519fc0b774 20824 samtools_1.4.1-1.debian.tar.xz da8acd1edf4f8cb0553284ca36a92449304670dab9e397bb0fd76bf8b35564f8 494734 samtools-dbgsym_1.4.1-1_amd64.deb 1c9f872141fefb1510c31bcfb8c78f9bf097e61788ac37cd88217a1180f4a139 2011022 samtools-test_1.4.1-1_all.deb 7022160deb8596578878ae7903c25ca963815fbd1e881271709cbe51c8aadbf5 6834 samtools_1.4.1-1_amd64.buildinfo 7f109f1e6a2608bbbfb5adf5fabfc7d2dd5186f9247202336a75546028b6115b 254016 samtools_1.4.1-1_amd64.deb Files: d527237d276552358f56aadf8b930cee 2232 science optional samtools_1.4.1-1.dsc bceee04bad70a7fea1c56e61f84c7766 3988842 science optional samtools_1.4.1.orig.tar.gz 77383229649ad754ab723b363d011eb1 20824 science optional samtools_1.4.1-1.debian.tar.xz 23cb676bc67e9b2d6121ee190435f34d 494734 debug extra samtools-dbgsym_1.4.1-1_amd64.deb 045ecc33315f6bfb67151a55bfb4e925 2011022 science optional samtools-test_1.4.1-1_all.deb 549190e7a9737c2d5d80bb45eeb0dda9 6834 science optional samtools_1.4.1-1_amd64.buildinfo 197522d47e6075827a2a55fa6a88e24e 254016 science optional samtools_1.4.1-1_amd64.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAllG0RIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG4hA/+NyNX3aNFrRYpFJqbyJ37s7modo5QF5Ul U7pYwtQ9IBST8cu2A++hH8RLRULoPuxGeHw+WeUnHp6JKaUrkTpOBmfgeMg4ly3E WQukRrWh8HzXifYozwaef2N7Caqk2dx2saTJv4wvJe3j1uJB6rRHJqk/Va77SIlZ YGVfOCoHXql2ngU7xIhCRSQOVeVjT6hjwC+LWhLSPzcL4u/iq9yH704UTGQMGXZA Rk8j+AUXHr1NjHR5qIr9kEbcaST3b2GTvqY8nBoxgTAzyYRSDAxvS3BEAinSlYU2 difk45DQTTBjJ3sZ8HAKNn7UZcHvfUiibvvOY07mXW4H/pLu74x1FaWhIBheoFv9 g4DJEAQP88ej74XZ01dwmR4O50m/WUOC04TB45kaHMGrBqNTWUz9QVbN/Dc7HWGf 0Wsna7Q3bTtHZ3vPyIAP80F619UsHPiu63nEKM3MyS5eL/DZcKoyvpGWBrnbNoO9 w8+Sku0qf5PCN111CaXNOnFloGrAYst8WmGzEKeQpv7sCu9CpfHU9ygeI+MpAE4U IqC+POC+VP9B556TPdWZUqO9hngO3/yp8zZ8kGOvmX3xzLqPzWyxWYhpaGEDyAnA gE0kCXRC0aA4wwnnXVUt20U5EVvfIzfhOl8mQfJ8MgvjbqdGrikRuOrnsrf1PRyq E4dK6BpRtMw= =U9TL -----END PGP SIGNATURE-----
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