Your message dated Thu, 27 Jul 2017 07:49:09 +0000
with message-id <[email protected]>
and subject line Bug#868919: fixed in physamp 1.0.2-1
has caused the Debian Bug report #868919,
regarding physamp: FTBFS: AlignmentOptimizer.cpp:39:32: fatal error:
Bpp/Seq/Alphabet.all: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
868919: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=868919
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: physamp
Version: 0.2.0-1
Severity: serious
Tags: buster sid
User: [email protected]
Usertags: qa-ftbfs-20170719 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/physamp && /usr/bin/c++ -Wall
> -Weffc++ -Wshadow -Wconversion -o
> CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c
> /<<PKGBUILDDIR>>/physamp/AlignmentOptimizer.cpp
> /<<PKGBUILDDIR>>/physamp/AlignmentOptimizer.cpp:39:32: fatal error:
> Bpp/Seq/Alphabet.all: No such file or directory
> #include <Bpp/Seq/Alphabet.all>
> ^
> compilation terminated.
> physamp/CMakeFiles/bppalnoptim.dir/build.make:65: recipe for target
> 'physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o' failed
> make[3]: *** [physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o]
> Error 1
The full build log is available from:
http://aws-logs.debian.net/2017/07/19/physamp_0.2.0-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: physamp
Source-Version: 1.0.2-1
We believe that the bug you reported is fixed in the latest version of
physamp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Julien Dutheil <[email protected]> (supplier of updated physamp
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 20 Jul 2017 10:42:52 +0200
Source: physamp
Binary: physamp
Architecture: source amd64
Version: 1.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Julien Dutheil <[email protected]>
Description:
physamp - sample sequence alignment according to its corresponding phylogen
Closes: 868919
Changes:
physamp (1.0.2-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream version
Closes: #868919
* d/watch pointing to Github
* Fix homepage
* debhelper 10
* Adjust versioned Build-Depends
* Standards-Version: 4.0.0 (no changes needed)
.
[ Julien Y. Dutheil ]
* Updated from upstream.
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