Source: r-bioc-rtracklayer Version: 1.34.1-1 Severity: serious Tags: buster sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20170807 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>/src' > make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' > installing to > /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs > ** R > ** data > ** demo > ** inst > ** preparing package for lazy loading > Warning: undefined slot classes in definition of "UCSCTableQuery": > track(class "characterORNULL"), table(class "characterORNULL"), > outputType(class "characterORNULL"), NAMES(class "characterORNULL"), > intersectTrack(class "characterORNULL") > Warning: undefined slot classes in definition of "Bed15TrackLine": > expNames(class "characterORNULL") > Creating a generic function for 'offset' from package 'stats' in package > 'rtracklayer' > Creating a generic function from function 'uri' in package 'rtracklayer' > ** help > *** installing help indices > ** building package indices > ** installing vignettes > ** testing if installed package can be loaded > Error: package or namespace load failed for 'rtracklayer' in dyn.load(file, > DLLpath = DLLpath, ...): > unable to load shared object > '/<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so': > > /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so: > undefined symbol: append_string_to_CharAEAE > Error: loading failed > Execution halted > ERROR: loading failed > * removing > '/<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer' > dh_auto_install: R CMD INSTALL -l > /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library --clean . > "--built-timestamp='Sun, 04 Dec 2016 21:53:17 +0100'" returned exit code 1 > debian/rules:4: recipe for target 'binary' failed > make: *** [binary] Error 25 The full build log is available from: http://aws-logs.debian.net/2017/08/07/r-bioc-rtracklayer_1.34.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
