Your message dated Mon, 18 Sep 2017 16:46:08 +0200
with message-id <[email protected]>
and subject line Change proposed by Frédéric Bonnard was successful
has caused the Debian Bug report #865132,
regarding diamond-aligner FTBFS on ppc64el: undefined reference to
Fixed_score_buffer
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
865132: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865132
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: diamond-aligner
Version: 0.9.8+dfsg-1
Severity: serious
https://buildd.debian.org/status/fetch.php?pkg=diamond-aligner&arch=ppc64el&ver=0.9.8%2Bdfsg-1&stamp=1497857897&raw=0
...
[100%] Linking CXX executable diamond
/usr/bin/cmake -E cmake_link_script CMakeFiles/diamond.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2
-fdebug-prefix-map=/«BUILDDIR»/diamond-aligner-0.9.8+dfsg=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations
-Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -Wl,-z,relro
-Wl,-z,now CMakeFiles/diamond.dir/src/run/main.cpp.o
CMakeFiles/diamond.dir/src/basic/config.cpp.o
CMakeFiles/diamond.dir/src/util/tinythread.cpp.o
CMakeFiles/diamond.dir/src/util/compressed_stream.cpp.o
CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o
CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o
CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o
CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o
CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o
CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o
CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o
CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o
CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o
CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o
CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o
CMakeFiles/diamond.dir/src/data/queries.cpp.o
CMakeFiles/diamond.dir/src/data/reference.cpp.o
CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o
CMakeFiles/diamond.dir/src/output/daa_record.cpp.o
CMakeFiles/diamond.dir/src/search/search.cpp.o
CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o
CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o
CMakeFiles/diamond.dir/src/util/util.cpp.o
CMakeFiles/diamond.dir/src/util/Timer.cpp.o
CMakeFiles/diamond.dir/src/basic/basic.cpp.o
CMakeFiles/diamond.dir/src/dp/floating_sw.cpp.o
CMakeFiles/diamond.dir/src/basic/hssp.cpp.o
CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o
CMakeFiles/diamond.dir/src/run/tools.cpp.o
CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o
CMakeFiles/diamond.dir/src/run/benchmark.cpp.o
CMakeFiles/diamond.dir/src/search/stage2.cpp.o
CMakeFiles/diamond.dir/src/output/output_format.cpp.o
CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o
CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o
CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o
CMakeFiles/diamond.dir/src/align/align_target.cpp.o
CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o
CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o
CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o
CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o
CMakeFiles/diamond.dir/src/extra/roc.cpp.o
CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o
CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o
CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o
CMakeFiles/diamond.dir/src/search/collision.cpp.o
CMakeFiles/diamond.dir/src/output/sam_format.cpp.o
CMakeFiles/diamond.dir/src/align/align.cpp.o
CMakeFiles/diamond.dir/src/search/setup.cpp.o
CMakeFiles/diamond.dir/src/extra/opt.cpp.o
CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o
CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o
CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o
CMakeFiles/diamond.dir/src/basic/masking.cpp.o
CMakeFiles/diamond.dir/src/dp/swipe.cpp.o
CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o
CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o
CMakeFiles/diamond.dir/src/data/seed_set.cpp.o
CMakeFiles/diamond.dir/src/util/binary_file.cpp.o
CMakeFiles/diamond.dir/src/util/simd.cpp.o -o diamond -rdynamic -lz -lpthread
CMakeFiles/diamond.dir/src/run/benchmark.cpp.o: In function
`benchmark_swipe(Sequence_set const&)':
./obj-powerpc64le-linux-gnu/./src/run/benchmark.cpp:243: undefined reference to
`Fixed_score_buffer<int> const& needleman_wunsch<int, Local>(sequence,
sequence, int&, Local const&, int const&)'
CMakeFiles/diamond.dir/src/align/align_target.cpp.o: In function
`Query_mapper::align_target(unsigned long, Statistics&)':
./obj-powerpc64le-linux-gnu/./src/align/align_target.cpp:279: undefined
reference to `Fixed_score_buffer<int> const& needleman_wunsch<int,
Local>(sequence, sequence, int&, Local const&, int const&)'
collect2: error: ld returned 1 exit status
CMakeFiles/diamond.dir/build.make:1632: recipe for target 'diamond' failed
make[3]: *** [diamond] Error 1
make[3]: Leaving directory
'/«BUILDDIR»/diamond-aligner-0.9.8+dfsg/obj-powerpc64le-linux-gnu'
CMakeFiles/Makefile2:70: recipe for target 'CMakeFiles/diamond.dir/all' failed
make[2]: *** [CMakeFiles/diamond.dir/all] Error 2
make[2]: Leaving directory
'/«BUILDDIR»/diamond-aligner-0.9.8+dfsg/obj-powerpc64le-linux-gnu'
Makefile:130: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory
'/«BUILDDIR»/diamond-aligner-0.9.8+dfsg/obj-powerpc64le-linux-gnu'
dh_auto_build: make -j8 returned exit code 2
debian/rules:14: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
--- End Message ---
--- Begin Message ---
Hi,
I'm hereby marking the bug as done since the change proposed
by Frédéric Bonnard <[email protected]> seems to work
(Thanks a lot Frédéric).
Kind regards
Andreas.
--
http://fam-tille.de
--- End Message ---
