Your message dated Tue, 05 Dec 2017 03:07:27 +0000
with message-id <[email protected]>
and subject line Bug#877344: fixed in python-mne 0.15.2+dfsg-1
has caused the Debian Bug report #877344,
regarding python-mne FTBFS: ERROR: Test ICA on raw and epochs
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
877344: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877344
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-mne
Version: 0.13.1+dfsg-3
Severity: serious
Tags: buster sid
Some recent change in unstable makes python-mne FTBFS:
https://tests.reproducible-builds.org/debian/history/python-mne.html
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-mne.html
...
======================================================================
ERROR: Test ICA on raw and epochs.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/build/1st/python-mne-0.13.1+dfsg/mne/utils.py", line 824, in dec
return function(*args, **kwargs)
File "/build/1st/python-mne-0.13.1+dfsg/mne/preprocessing/tests/test_ica.py",
line 214, in test_ica_core
ica.fit(raw, picks=pcks, start=start, stop=stop)
File "<string>", line 2, in fit
File "/build/1st/python-mne-0.13.1+dfsg/mne/utils.py", line 708, in verbose
return function(*args, **kwargs)
File "/build/1st/python-mne-0.13.1+dfsg/mne/preprocessing/ica.py", line 359,
in fit
tstep, verbose)
File "/build/1st/python-mne-0.13.1+dfsg/mne/preprocessing/ica.py", line 425,
in _fit_raw
self._fit(data, self.max_pca_components, 'raw')
File "/build/1st/python-mne-0.13.1+dfsg/mne/preprocessing/ica.py", line 539,
in _fit
raise RuntimeError('One PCA component captures most of the '
RuntimeError: One PCA component captures most of the explained variance, your
threshold results in 0 components. You should select a higher value.
-------------------- >> begin captured stdout << ---------------------
Opening raw data file
/build/1st/python-mne-0.13.1+dfsg/mne/io/tests/data/test_raw.fif...
Read a total of 3 projection items:
PCA-v1 (1 x 102) idle
PCA-v2 (1 x 102) idle
PCA-v3 (1 x 102) idle
Range : 25800 ... 40199 = 42.956 ... 66.930 secs
Ready.
Current compensation grade : 0
Reading 0 ... 2703 = 0.000 ... 4.500 secs...
366 x 366 full covariance (kind = 1) found.
Read a total of 4 projection items:
PCA-v1 (1 x 102) active
PCA-v2 (1 x 102) active
PCA-v3 (1 x 102) active
Average EEG reference (1 x 60) active
1 matching events found
Applying baseline correction (mode: mean)
Created an SSP operator (subspace dimension = 3)
3 projection items activated
Loading data for 1 events and 241 original time points ...
0 bad epochs dropped
<ICA | no decomposition, fit (fastica): samples, no dimension reduction>
Fitting ICA to data using 306 channels.
Please be patient, this may take some time
Selection by number: 2 components
Fitting ICA to data using 306 channels.
Please be patient, this may take some time
Selection by number: 2 components
Fitting ICA to data using 306 channels.
Please be patient, this may take some time
Selection by number: 2 components
<ICA | epochs decomposition, fit (fastica): 241 samples, 2 components,
channels used: "mag"; "grad">
<ICA | no decomposition, fit (fastica): samples, no dimension reduction>
Fitting ICA to data using 306 channels.
Please be patient, this may take some time
--------------------- >> end captured stdout << ----------------------
----------------------------------------------------------------------
Ran 628 tests in 878.575s
FAILED (SKIP=225, errors=1)
debian/rules:25: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1
--- End Message ---
--- Begin Message ---
Source: python-mne
Source-Version: 0.15.2+dfsg-1
We believe that the bug you reported is fixed in the latest version of
python-mne, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <[email protected]> (supplier of updated python-mne
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 04 Dec 2017 13:07:52 -0500
Source: python-mne
Binary: python-mne
Architecture: source all
Version: 0.15.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Yaroslav Halchenko <[email protected]>
Description:
python-mne - Python modules for MEG and EEG data analysis
Closes: 858909 877344
Changes:
python-mne (0.15.2+dfsg-1) unstable; urgency=medium
.
* New upstream release (Closes: #858909)
- should resolve failing tests (Closes: #877344)
* debian/control
- Added python-pytest{,-cov} to build-depends and switch to use
py.test in debian/rules
- Added python-nibabel to B-Depends, and Recommends
* A number of patches added to mitigate failing and segfaulting
tests:
- deb_skip_segfaultingtests
- up_skip_test_requires_data
- up_tempita_unicode
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