control: tags -1 help
Hi,
I've upgraded snakemake in Git to latest upstream but its featuring the
same issue. I'm pretty sure you Python people know a simple answer for
this issue.
Any help would be welcome
Andreas.
On Sat, Oct 14, 2017 at 05:33:22AM +0300, Adrian Bunk wrote:
> Source: snakemake
> Version: 3.10.0-1
> Severity: serious
> Tags: buster sid
>
> https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/snakemake.html
>
> ...
> ======================================================================
> ERROR: Failure: Exception (snakemake not in PATH. For testing, install
> snakemake with 'pip install -e .'. You should do this in a separate
> environment (via conda or virtualenv).)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest
> raise self.exc_val.with_traceback(self.tb)
> File "/usr/lib/python3/dist-packages/nose/loader.py", line 418, in
> loadTestsFromName
> addr.filename, addr.module)
> File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in
> importFromPath
> return self.importFromDir(dir_path, fqname)
> File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in
> importFromDir
> mod = load_module(part_fqname, fh, filename, desc)
> File "/usr/lib/python3.6/imp.py", line 235, in load_module
> return load_source(name, filename, file)
> File "/usr/lib/python3.6/imp.py", line 172, in load_source
> module = _load(spec)
> File "<frozen importlib._bootstrap>", line 684, in _load
> File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
> File "<frozen importlib._bootstrap_external>", line 678, in exec_module
> File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
> File
> "/build/1st/snakemake-3.10.0/.pybuild/pythonX.Y_3.6/build/tests/tests.py",
> line 21, in <module>
> raise Exception("snakemake not in PATH. For testing, install snakemake
> with "
> Exception: snakemake not in PATH. For testing, install snakemake with 'pip
> install -e .'. You should do this in a separate environment (via conda or
> virtualenv).
>
> ----------------------------------------------------------------------
> Ran 4 tests in 0.535s
>
> FAILED (errors=1)
> E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd
> /build/1st/snakemake-3.10.0/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose
> tests
> dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned
> exit code 13
> debian/rules:18: recipe for target 'build' failed
> make: *** [build] Error 25
>
>
>
> The problem is the the following line in debian/rules:
>
> export PATH:=$(CURDIR)/.pybuild/pythonX.Y_3.5/build/bin:$(PATH)
>
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