Source: snakemake
Version: 4.3.1-1
Severity: serious
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/snakemake.html
...
dh_auto_test -O--buildsystem=pybuild
I: pybuild pybuild:267: chmod +x /build/1st/snakemake-4.3.1/bin/snakemake; cp
-r /build/1st/snakemake-4.3.1/bin /build/1st/snakemake-4.3.1/tests
/build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build
I: pybuild base:217: cd
/build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build; python3.6 -m
nose tests
..Building DAG of jobs...
Provided cores: 1
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 1
1
rule 1:
output: result.txt
jobid: 0
Finished job 0.
1 of 1 steps (100%) done
.E
======================================================================
ERROR: Failure: Exception (snakemake not in PATH. For testing, install
snakemake with 'pip install -e .'. You should do this in a separate environment
(via conda or virtualenv).)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest
raise self.exc_val.with_traceback(self.tb)
File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/usr/lib/python3.6/imp.py", line 235, in load_module
return load_source(name, filename, file)
File "/usr/lib/python3.6/imp.py", line 172, in load_source
module = _load(spec)
File "<frozen importlib._bootstrap>", line 684, in _load
File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 678, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File
"/build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build/tests/tests.py",
line 21, in <module>
raise Exception("snakemake not in PATH. For testing, install snakemake with
"
Exception: snakemake not in PATH. For testing, install snakemake with 'pip
install -e .'. You should do this in a separate environment (via conda or
virtualenv).
----------------------------------------------------------------------
Ran 4 tests in 0.457s
FAILED (errors=1)
E: pybuild pybuild:336: test: plugin distutils failed with: exit code=1: cd
/build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build; python3.6 -m
nose tests
dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned
exit code 13
make: *** [debian/rules:18: build] Error 25
