Your message dated Sat, 31 Mar 2018 03:54:42 +0000
with message-id <e1f27bg-00081y...@fasolo.debian.org>
and subject line Bug#894299: Removed package(s) from unstable
has caused the Debian Bug report #892644,
regarding python-pybedtools FTBFS: test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
892644: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=892644
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-pybedtools
Version: 0.7.10-2
Severity: serious
Some recent change in usntable makes python-pybedtools FTBFS:
https://tests.reproducible-builds.org/debian/history/python-pybedtools.html
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-pybedtools.html
...
dh_auto_test -O--buildsystem=pybuild
I: pybuild pybuild:219: cp
/build/1st/python-pybedtools-0.7.10/debian/mpl-expected.png
/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/
I: pybuild base:184: cd
/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build; python3.6 -m
nose --attr '!url'
...................................F......................................F.......................
*****
*****WARNING: Genome (-g) files are ignored when BAM input is provided.
*****
..............................................................................................................................................................................................................................................................................................................................FFFFFFFF.........FFFF..........
*****
*****WARNING: Genome (-g) files are ignored when BAM input is provided.
*****
.
*****
*****WARNING: Genome (-g) files are ignored when BAM input is provided.
*****
........................................S..
======================================================================
FAIL: pybedtools.test.test1.test_randomstats
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File
"/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/test1.py",
line 796, in test_randomstats
assert results['percentile'] == 89.5
AssertionError
======================================================================
FAIL: pybedtools.test.test1.test_reldist
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File
"/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/test1.py",
line 1461, in test_reldist
assert results == {'reldist': [0.15, 0.21, 0.28], 'count': [1, 1, 1],
'total': [3, 3, 3], 'fraction': [0.333, 0.333, 0.333]}, results
AssertionError: {'reldist': [0.21], 'count': [1], 'total': [1], 'fraction':
[1.0]}
======================================================================
FAIL: merge, i=filename ibam=False, {'s': True}
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File
"/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/test_iter.py",
line 68, in run
assert res == expected
AssertionError:
-------------------- >> begin captured stdout << ---------------------
/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/tmp/pybedtools.0oti4rl_.tmp
Method call:
BedTool.merge(s=True)
Got:
chr1 1 200
chr1 150 500
chr1 900 950
Expected:
chr1 1 200 +
chr1 150 500 -
chr1 900 950 +
Diff:
---
+++
@@ -1,3 +1,3 @@
-chr1 1 200
-chr1 150 500
-chr1 900 950
+chr1 1 200 +
+chr1 150 500 -
+chr1 900 950 +
Showing special characters:
Got:
chr1\t1\t200\n
chr1\t150\t500\n
chr1\t900\t950\n
Expected:
chr1\t1\t200\t+\n
chr1\t150\t500\t-\n
chr1\t900\t950\t+\n
Diff:
---
+++
@@ -1,3 +1,3 @@
-chr1\t1\t200\n
-chr1\t150\t500\n
-chr1\t900\t950\n
+chr1\t1\t200\t+\n
+chr1\t150\t500\t-\n
+chr1\t900\t950\t+\n
--------------------- >> end captured stdout << ----------------------
...
FAILED (SKIP=1, failures=14)
E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd
/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build; python3.6 -m
nose --attr '!url'
dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned
exit code 13
make: *** [debian/rules:14: build] Error 25
--- End Message ---
--- Begin Message ---
Version: 0.7.10-2+rm
Dear submitter,
as the package python-pybedtools has just been removed from the Debian archive
unstable we hereby close the associated bug reports. We are sorry
that we couldn't deal with your issue properly.
For details on the removal, please see https://bugs.debian.org/894299
The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.
This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.
Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)
--- End Message ---
