Your message dated Tue, 17 Jul 2018 06:49:00 +0000 with message-id <[email protected]> and subject line Bug#903867: fixed in cod-tools 2.2+dfsg-3 has caused the Debian Bug report #903867, regarding cod-tools: FTBFS when built with dpkg-buildpackage -A to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 903867: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=903867 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:cod-tools Version: 2.2+dfsg-2 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster with "dpkg-buildpackage -A" but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with python2,python3 --no-parallel dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i dh_auto_build -i make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<<BUILDDIR>>/cod-tools-2.2+dfsg' Makefile:138: .diff.depend: No such file or directory tools/mkperldepend scripts/cif-to-utf8 > scripts/.cif-to-utf8.d tools/mkperldepend scripts/cif2cod > scripts/.cif2cod.d tools/mkperldepend scripts/cif2csv > scripts/.cif2csv.d tools/mkperldepend scripts/cif2json > scripts/.cif2json.d tools/mkperldepend scripts/cif2rdf > scripts/.cif2rdf.d [... snipped ...] pycodcif.c:322:43: warning: passing argument 3 of 'PyDict_SetItemString' makes pointer from integer without a cast [-Wint-conversion] PyDict_SetItemString( ret, "nerrors", PyInt_FromLong( nerrors ) ); ^~~~~~~~~~~~~~ In file included from /usr/include/python3.6m/Python.h:90:0, from pycodcif.c:1: /usr/include/python3.6m/dictobject.h:160:17: note: expected 'PyObject * {aka struct _object *}' but argument is of type 'int' PyAPI_FUNC(int) PyDict_SetItemString(PyObject *dp, const char *key, PyObject *item); ^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/cod-tools-2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/externals/cexceptions/cxprintf.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/externals/cexceptions/stringx.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/externals/cexceptions/allocx.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/externals/cexceptions/stdiox.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/externals/cexceptions/cexceptions.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif_options.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/common.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/compo nents/codcif/ciftable.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif2_lexer.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cifvalue.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cifmessage.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif_grammar_flex.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif_lexer.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/datablock.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif_compiler.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/ciflist.o build/temp.linux-x86_64-3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif_grammar.tab.o build/temp.linux-x86_64- 3.6/<<BUILDDIR>>/cod-tools-2.2+dfsg/src/components/codcif/cif2_grammar.tab.o build/temp.linux-x86_64-3.6/pycodcif_wrap.o build/temp.linux-x86_64-3.6/pycodcif.o -o build/lib.linux-x86_64-3.6/pycodcif/_pycodcif.cpython-36m-x86_64-linux-gnu.so running install_lib creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6 creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages creating /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif copying build/lib.linux-x86_64-3.6/pycodcif/_pycodcif.cpython-36m-x86_64-linux-gnu.so -> /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif copying build/lib.linux-x86_64-3.6/pycodcif/__init__.py -> /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif copying build/lib.linux-x86_64-3.6/pycodcif/pycodcif.py -> /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif byte-compiling /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif/__init__.py to __init__.cpython-36.pyc byte-compiling /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif/pycodcif.py to pycodcif.cpython-36.pyc running install_egg_info running egg_info writing pycodcif.egg-info/PKG-INFO writing dependency_links to pycodcif.egg-info/dependency_links.txt writing top-level names to pycodcif.egg-info/top_level.txt reading manifest file 'pycodcif.egg-info/SOURCES.txt' writing manifest file 'pycodcif.egg-info/SOURCES.txt' Copying pycodcif.egg-info to /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/python3-pycodcif/usr/local/lib/python3.6/dist-packages/pycodcif-2.2.egg-info running install_scripts make[1]: Leaving directory '/<<BUILDDIR>>/cod-tools-2.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<<BUILDDIR>>/cod-tools-2.2+dfsg' for TPL in debian/templates/*; \ do sed -e "s@##DEB_HOST_MULTIARCH##@x86_64-linux-gnu@g" \ ${TPL} > debian/$(basename ${TPL}); \ done rm /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/tmp/usr/bin/cif_parse_old_star doc/man/cif_parse_old_star.1 dh_install rm -rf /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/cod-tools/usr/share/perl5/COD/CIF/Parser rm /<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/cod-tools/usr/share/perl5/COD/Precision.pm rm: cannot remove '/<<BUILDDIR>>/cod-tools-2.2+dfsg/debian/cod-tools/usr/share/perl5/COD/Precision.pm': No such file or directory debian/rules:18: recipe for target 'override_dh_install' failed make[1]: *** [override_dh_install] Error 1 make[1]: Leaving directory '/<<BUILDDIR>>/cod-tools-2.2+dfsg' debian/rules:10: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-indep subprocess returned exit status 2 -------------------------------------------------------------------------------- Hint: Try splitting override_dh_install into override_dh_install-arch and override_dh_install-indep. Hint 2: Try uploading in source-only form (dpkg-buildpackage -S) so that this kind of bugs do not propagate to testing. Thanks.
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--- Begin Message ---Source: cod-tools Source-Version: 2.2+dfsg-3 We believe that the bug you reported is fixed in the latest version of cod-tools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <[email protected]> (supplier of updated cod-tools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 17 Jul 2018 01:17:02 -0400 Source: cod-tools Binary: libcexceptions0 libcexceptions-dev libgetoptions0 libgetoptions-dev libcodcif2 libcodcif-dev libcod-precision-perl libcod-usermessage-perl libcod-cif-parser-bison-perl libcod-cif-parser-yapp-perl python-pycodcif python3-pycodcif cod-tools Architecture: source Version: 2.2+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <[email protected]> Changed-By: Andrius Merkys <[email protected]> Description: cod-tools - tools for manipulating CIF format files libcexceptions-dev - C exception handling library (development files) libcexceptions0 - C exception handling library libcod-cif-parser-bison-perl - error-correcting CIF parser - Perl bindings libcod-cif-parser-yapp-perl - error-correcting CIF parser - pure Perl implementation libcod-precision-perl - COD precision handling module for Perl language libcod-usermessage-perl - COD message formatting module for Perl language libcodcif-dev - error-correcting CIF parser - headers and static libraries libcodcif2 - error-correcting CIF parser - shared library libgetoptions-dev - Command line argument processing library for C (development files libgetoptions0 - Command line argument processing library for C python-pycodcif - error-correcting CIF parser - Python bindings python3-pycodcif - error-correcting CIF parser - Python3 bindings Closes: 903867 Changes: cod-tools (2.2+dfsg-3) unstable; urgency=medium . * Renaming target 'override_dh_install' to 'override_dh_install-arch' (Closes: #903867). * debian/control: adding a pair of missing build-depends. * debian/control: autoconf is no longer required, as libsymspg is not compiled during build. * Adding a patch fixing Python3 compilation errors/warnings of pycodcif. * Adding patch descriptions. Checksums-Sha1: ad50c5afc01601e5b6d9143ce9d2afac560ae585 3438 cod-tools_2.2+dfsg-3.dsc c379c0970c8a9d435457645055dd03c21363a578 20292 cod-tools_2.2+dfsg-3.debian.tar.xz dbf6e681d5326dcd6ed9c8ce3c460d5c5e4cc4f5 11660 cod-tools_2.2+dfsg-3_source.buildinfo Checksums-Sha256: 07ea9cec37d1991be4aed38368d3c54a81a5132a02ad3d6192d3137a12290ea7 3438 cod-tools_2.2+dfsg-3.dsc b0085baa206657d2ba17323de61edc8ba949199ab218a0debea4e58c471ec4b7 20292 cod-tools_2.2+dfsg-3.debian.tar.xz ce1378cdfb7a1d439192a7a6727bdeffb53facb0333e8de9362c0c3dfb1413ca 11660 cod-tools_2.2+dfsg-3_source.buildinfo Files: ddc28226f01a12f510586d2ca8e8f29f 3438 science optional cod-tools_2.2+dfsg-3.dsc 1416dce64074b273dbc9a747cc86c8ca 20292 science optional cod-tools_2.2+dfsg-3.debian.tar.xz c4d1014a4e76a3a27a10d7ff604c5d99 11660 science optional cod-tools_2.2+dfsg-3_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJNBAEBCgA3FiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAltNjCwZHGFuZHJpdXMu bWVya3lzQGdtYWlsLmNvbQAKCRDl9D+cJzTyh/ezD/9IDmQv2lTkUFkgGMJkgC4e eGb5vyUUiR3NYMJKp9RyA9/wvrhtUZ5QX1TXoFJMrfIqKwZMt/wMjg2NTxIngvBs wCnwwftEZq8NGaEq29tp9OjarCADu3m+wIlrBU3O/SxVrzZKRc5slwhKQUU6LQoT Jn+jtqFGQWCg4I3Tf3NuzGdu/4XmBKvd8VPoTRdmbCsvXcd4u5kdaL/KKfa0PoYv M1/KYI2pyW/pADgTFb2Huxp3rKIeZoP3XAMcSBFap3D99pgjdEEDw4+F7nY3DeS3 vl65mJMHv43ZULFwTpPYD3UijaK6zCPjXwg7vcfMeH+0r+JEShpMd3qs7xbVBqY6 DObHP+MEU05uOn2fYgIFsWV9urjqW9pzClUO4ZiJrCTLmDZ3bZrbIFg3Wn9Ld1iz 3SreqcLC4zWbix2EIJQKxYNvZvCg48kc8F3R2ox72Yva1iy0FcNcGbchZRATSPSV 9S77N7bgrb86goei84qnTuvfVx9/d47uwh1i1BmNmwgZDYmEBZgCF/4bNY4cKG+e T+hcLZYdGc361JLO8evsXo0kv0TMEgvDhZ0nfk/eNN5bodyK4gmCNSQx1YfH5OeJ jUmQMxiDFJZtxD6ZOvTBp2b/CrDqwPKGm81ns+Vs0knILhO+2HR1ztJHbj6QZNxB 8J5k+PdCJWenddxziWnNnA== =Hr87 -----END PGP SIGNATURE-----
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