Your message dated Wed, 18 Jul 2018 08:09:42 +0800
with message-id <[email protected]>
and subject line Re: slepc: ftbfs with GCC-8
has caused the Debian Bug report #897862,
regarding slepc: ftbfs with GCC-8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
897862: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897862
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:slepc
Version: 3.8.3+dfsg1-1
Severity: normal
Tags: sid buster
User: [email protected]
Usertags: ftbfs-gcc-8
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.
The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/slepc_3.8.3+dfsg1-1_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html
[...]
Using libraries:
-L/<<BUILDDIR>>/slepc-3.8.3+dfsg1/installed-x86_64-linux-gnu-real/lib
-L/<<BUILDDIR>>/slepc-3.8.3+dfsg1/installed-x86_64-linux-gnu-real/lib
-lslepc_real -lparpack -larpack
-L/usr/lib/petscdir/petsc3.8/x86_64-linux-gnu-real/lib
-L/usr/lib/petscdir/petsc3.8/x86_64-linux-gnu-real/lib
-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/openmpi/lib
-L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/7
-L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lpetsc_real -lHYPRE_IJ_mv
-lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls
-lHYPRE_struct_mv -lHYPRE_utilities -lsuperlu_dist -ldmumps -lzmumps -lsmumps
-lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lfftw3
-lfftw3_mpi -lumfpack -lamd -lcholmod -lklu -llapack -lblas -lptesmumps
-lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lmpi_usempif08
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lquadmath
-lmpi_cxx -lstdc++ -lm -L/usr/lib/x86_64-linux-g
nu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/x86_64-linux-gnu
-L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpi -lgcc_s
-lpthread -ldl
make[3]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[3]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
------------------------------------------
make[3]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[3]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
Using mpiexec: mpiexec
make[3]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[3]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
------------------------------------------
make[3]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[3]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
Using MAKEFLAGS: -j4 w -j8 -Oline --jobserver-auth=3,4 --
PETSC_ARCH=installed-x86_64-linux-gnu-real
SLEPC_DIR=/<<BUILDDIR>>/slepc-3.8.3+dfsg1
PETSC_DIR=/usr/lib/petscdir/petsc3.8/x86_64-linux-gnu-real
make[3]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[3]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
==========================================
make[3]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[4]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
/usr/bin/python ./config/gmakegen.py
--petsc-arch=installed-x86_64-linux-gnu-real --installed-petsc=1
Use "/usr/bin/make V=1" to see the verbose compile lines.
FC installed-x86_64-linux-gnu-real/obj/src/sys/f90-mod/slepcsysmod.o
/<<BUILDDIR>>/slepc-3.8.3+dfsg1/src/sys/f90-mod/slepcsysmod.F:11:11:
use petscsysdef
1
Fatal Error: Cannot read module file 'petscsysdef.mod' opened at (1), because
it was created by a different version of GNU Fortran
compilation terminated.
make[4]: *** [gmakefile:170:
installed-x86_64-linux-gnu-real/obj/src/sys/f90-mod/slepcsysmod.o] Error 1
make[4]: *** Waiting for unfinished jobs....
CXX
installed-x86_64-linux-gnu-real/obj/src/sys/ftn-custom/zslepc_startf.o
CXX installed-x86_64-linux-gnu-real/obj/src/sys/slepcutil.o
CXX installed-x86_64-linux-gnu-real/obj/src/sys/dlregisslepc.o
CXX
installed-x86_64-linux-gnu-real/obj/src/sys/ftn-custom/zslepc_start.o
CXX installed-x86_64-linux-gnu-real/obj/src/sys/ftn-custom/zslepcutil.o
CXX installed-x86_64-linux-gnu-real/obj/src/sys/slepcsc.o
CXX installed-x86_64-linux-gnu-real/obj/src/sys/slepcinit.o
make[4]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[3]: *** [/<<BUILDDIR>>/slepc-3.8.3+dfsg1/lib/slepc/conf/slepc_rules:202:
slepc_gnumake] Error 2
[1;31m*******************************ERROR************************************
Error during compile, check
./installed-x86_64-linux-gnu-real/lib/slepc/conf/make.log
Send all contents of ./installed-x86_64-linux-gnu-real/lib/slepc/conf to
[email protected]
************************************************************************[0;39m[0;49m
make[2]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make[2]: *** [makefile:32: all] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
dh_auto_build: make -j8 -Oline SLEPC_DIR=/<<BUILDDIR>>/slepc-3.8.3\+dfsg1
PETSC_DIR=/usr/lib/petscdir/petsc3.8/x86_64-linux-gnu-real returned exit code 2
make[1]: *** [debian/rules:136: override_dh_auto_install] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
make: *** [debian/rules:95: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--- End Message ---
--- Begin Message ---
On Fri, 04 May 2018 12:23:40 +0000 Matthias Klose <[email protected]>
wrote:
>
> The package fails to build in a test rebuild on at least amd64 with
> gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
> severity of this report will be raised before the buster release.
>
> make[4]: Entering directory '/<<BUILDDIR>>/slepc-3.8.3+dfsg1'
> /usr/bin/python ./config/gmakegen.py --petsc-arch=installed-x86_64-
linux-gnu-real --installed-petsc=1
> Use "/usr/bin/make V=1" to see the verbose compile lines.
> FC installed-x86_64-linux-gnu-real/obj/src/sys/f90-
mod/slepcsysmod.o
> /<<BUILDDIR>>/slepc-3.8.3+dfsg1/src/sys/f90-mod/slepcsysmod.F:11:11:
>
> use petscsysdef
> 1
> Fatal Error: Cannot read module file 'petscsysdef.mod' opened at (1),
because it was created by a different version of GNU Fortran
> compilation terminated.
This FTBFS is not valid. As the error message says, a build of SLEPc
with gfortran-8 needs to follow a build of PETSc using gfortran-8.
Drew
--- End Message ---
