Your message dated Sun, 14 Oct 2018 20:50:58 +0000
with message-id <[email protected]>
and subject line Bug#905438: fixed in htslib 1.9-3
has caused the Debian Bug report #905438,
regarding htslib: FTBFS on i386: 2 tests fail
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
905438: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=905438
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: htslib
Version: 1.9-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)
Hi,
htslib/experimental FTBFS on i386:
https://buildd.debian.org/status/fetch.php?pkg=htslib&arch=i386&ver=1.9-1&stamp=1532825380&raw=0
./test_view -@4 -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980
CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 >
range.tmp
./compare_sam.pl range.tmp range.out
./test_view -@4 range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500
CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp
./compare_sam.pl range.tmp range.out
test_vcf_api:
/<<PKGBUILDDIR>>/test/test-vcf-api /tmp/JMIB5wVvT_/test-vcf-api.bcf
bcf_get_format_float didn't produce the expected output.
.. failed ...
test_vcf_sweep:
/<<PKGBUILDDIR>>/test/test-vcf-sweep /tmp/JMIB5wVvT_/test-vcf-api.bcf
The outputs differ:
/<<PKGBUILDDIR>>/test/test-vcf-sweep.out
/<<PKGBUILDDIR>>/test/test-vcf-sweep.out.new
.. failed ...
Andreas
--- End Message ---
--- Begin Message ---
Source: htslib
Source-Version: 1.9-3
We believe that the bug you reported is fixed in the latest version of
htslib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated htslib
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 14 Oct 2018 09:53:04 -0700
Source: htslib
Binary: libhts2 libhts-dev libhts-private-dev htslib-test tabix
Architecture: source
Version: 1.9-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Description:
htslib-test - Test data for HTSlib
libhts-dev - development files for the HTSlib
libhts-private-dev - private development files for the HTSlib (use with care)
libhts2 - C library for high-throughput sequencing data formats
tabix - generic indexer for TAB-delimited genome position files
Closes: 905438
Changes:
htslib (1.9-3) unstable; urgency=medium
.
* debian/control: drop *i386. Closes: #905438.
Checksums-Sha1:
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htslib_1.9-3.dsc
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htslib_1.9-3_source.buildinfo
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