Bug#912371: marked as done (java-common breaks starjava-votable autopkgtest)

Fri, 02 Nov 2018 12:42:35 -0700 

Your message dated Fri, 02 Nov 2018 19:39:44 +0000
with message-id <e1gifig-0003vb...@fasolo.debian.org>
and subject line Bug#912346: fixed in starjava-votable 2.0+2018.10.31-1
has caused the Debian Bug report #912346,
regarding java-common breaks starjava-votable autopkgtest
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
912346: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=912346
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message --- 
Source: java-common, starjava-votable
Control: found -1 java-common/0.70
Control: found -1 starjava-votable/2.0+2018.05.01-1
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update

Dear maintainers,

With a recent upload of java-common the autopkgtest of starjava-votable
fails in testing when that autopkgtest is run with the binary packages
of java-common from unstable. It passes when run with only packages from
testing. In tabular form:
                       pass            fail
java-common            from testing    0.70
starjava-votable       from testing    2.0+2018.05.01-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is contributing to the delay of the migration
of java-common to testing [1]. Due to the nature of this issue, I filed
this bug report against both packages. Can you please investigate the
situation and reassign the bug to the right package? If needed, please
change the bug's severity.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=java-common

https://ci.debian.net/data/autopkgtest/testing/amd64/s/starjava-votable/1225607/log.gz

autopkgtest [18:58:51]: test command1: ant test -Dbuild.dir=$ADTTMP
-Drunonly.install=true -Djunit.present=true -Djava.awt.headless=true
autopkgtest [18:58:51]: test command1: [-----------------------
Buildfile: /tmp/autopkgtest-lxc.rb2iyjjs/downtmp/build.CnE/src/build.xml

prepare:

check_packages:

build:

compile-tests:
    [mkdir] Created dir:
/tmp/autopkgtest-lxc.rb2iyjjs/downtmp/autopkgtest_tmp/testcases
    [javac] Compiling 17 source files to
/tmp/autopkgtest-lxc.rb2iyjjs/downtmp/autopkgtest_tmp/testcases
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.

run-tests:
    [junit] Testsuite: uk.ac.starlink.votable.CoosysTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.857 sec
    [junit]
    [junit] Testsuite: uk.ac.starlink.votable.DOMTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.654 sec
    [junit]
    [junit] Testsuite: uk.ac.starlink.votable.FitsPlusTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.849 sec
    [junit]
    [junit] Testsuite: uk.ac.starlink.votable.LinkTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.67 sec
    [junit]
    [junit] ------------- Standard Error -----------------
    [junit] Oct 30, 2018 6:59:00 PM
uk.ac.starlink.table.storage.AdaptiveByteStore getDefaultLimit
    [junit] INFO: AdaptiveByteStore default memory limit = 1872M * 0.125
= 234M
    [junit] ------------- ---------------- ---------------
    [junit] Testsuite: uk.ac.starlink.votable.MultiTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.998 sec
    [junit]
    [junit] Testsuite: uk.ac.starlink.votable.ParameterTest
    [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.31 sec
    [junit]
    [junit] Testsuite: uk.ac.starlink.votable.ReferenceTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.38 sec
    [junit]
    [junit] Testsuite: uk.ac.starlink.votable.SerializerTest
    [junit] Tests run: 2, Failures: 0, Errors: 1, Skipped: 0, Time
elapsed: 2.15 sec
    [junit]
    [junit] ------------- Standard Error -----------------
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest10223147168984043305.dat
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest10223147168984043305.dat
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest15812415494802997538.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest7821491335334887297.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest13282744777746387536.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
    [junit] INFO: Will read stream (not random-access): STREAM
    [junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
    [junit] INFO: Will map as single block: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest3990774301429634108.fits
    [junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
    [junit] INFO: Mapping as single file: stest3990774301429634108.fits
    [junit] ------------- ---------------- ---------------
    [junit] Testcase: testURLs(uk.ac.starlink.votable.SerializerTest):
Caused an ERROR
    [junit] Can't overwrite cause with java.io.FileNotFoundException:
stest10223147168984043305.dat (No such file or directory)
    [junit] java.lang.IllegalStateException: Can't overwrite cause with
java.io.FileNotFoundException: stest10223147168984043305.dat (No such
file or directory)
    [junit]     at java.base/java.lang.Throwable.initCause(Throwable.java:462)
    [junit]     at
uk.ac.starlink.votable.VOTableDOMBuilder$Worker.processFitsHref(VOTableDOMBuilder.java:156)
    [junit]     at
uk.ac.starlink.votable.SkeletonDOMBuilder$BasicContentHandler.startElement(SkeletonDOMBuilder.java:192)
    [junit]     at
uk.ac.starlink.votable.CustomDOMBuilder.startElement(CustomDOMBuilder.java:157)
    [junit]     at
uk.ac.starlink.votable.VOTableDOMBuilder.startElement(VOTableDOMBuilder.java:79)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:510)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:183)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(XMLDocumentFragmentScannerImpl.java:1377)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2708)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:605)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:534)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:888)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:824)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1216)
    [junit]     at
java.xml/com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:635)
    [junit]     at
uk.ac.starlink.votable.VOElementFactory.parseToDOM(VOElementFactory.java:536)
    [junit]     at
uk.ac.starlink.votable.VOElementFactory.transformToDOM(VOElementFactory.java:391)
    [junit]     at
uk.ac.starlink.votable.VOElementFactory.makeVOElement(VOElementFactory.java:221)
    [junit]     at
uk.ac.starlink.votable.SerializerTest.checkBadSource(SerializerTest.java:135)
    [junit]     at
uk.ac.starlink.votable.SerializerTest.exerciseStreamSerializer(SerializerTest.java:118)
    [junit]     at
uk.ac.starlink.votable.SerializerTest.testURLs(SerializerTest.java:84)
    [junit]     at
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
    [junit]     at
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    [junit]     at
java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    [junit] Caused by: org.xml.sax.SAXParseException; lineNumber: 8;
columnNumber: 47; stest10223147168984043305.dat (No such file or directory)
    [junit]     at
uk.ac.starlink.votable.VOTableDOMBuilder$Worker.processFitsHref(VOTableDOMBuilder.java:155)
    [junit] Caused by: java.io.FileNotFoundException:
stest10223147168984043305.dat (No such file or directory)
    [junit]     at java.base/java.io.FileInputStream.open0(Native Method)
    [junit]     at
java.base/java.io.FileInputStream.open(FileInputStream.java:219)
    [junit]     at
java.base/java.io.FileInputStream.<init>(FileInputStream.java:157)
    [junit]     at
java.base/java.io.FileInputStream.<init>(FileInputStream.java:112)
    [junit]     at
java.base/sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:86)
    [junit]     at
java.base/sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:184)
    [junit]     at
uk.ac.starlink.util.ContentCoding$1.getInputStream(ContentCoding.java:151)
    [junit]     at
uk.ac.starlink.util.URLDataSource.getRawInputStream(URLDataSource.java:98)
    [junit]     at
uk.ac.starlink.util.DataSource.initialise(DataSource.java:257)
    [junit]     at uk.ac.starlink.util.DataSource.getIntro(DataSource.java:372)
    [junit]     at
uk.ac.starlink.fits.FitsTableBuilder.makeStarTable(FitsTableBuilder.java:109)
    [junit]     at
uk.ac.starlink.votable.VOTableDOMBuilder$Worker.processFitsHref(VOTableDOMBuilder.java:146)
    [junit]
    [junit]

BUILD FAILED
/tmp/autopkgtest-lxc.rb2iyjjs/downtmp/build.CnE/src/build.xml:931: Test
uk.ac.starlink.votable.SerializerTest failed

Total time: 14 seconds
autopkgtest [18:59:06]: test command1: -----------------------]

Attachment: signature.asc
Description: OpenPGP digital signature


--- End Message ---
--- Begin Message --- 
Source: starjava-votable
Source-Version: 2.0+2018.10.31-1

We believe that the bug you reported is fixed in the latest version of
starjava-votable, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 912...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Ole Streicher <oleb...@debian.org> (supplier of updated starjava-votable 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 01 Nov 2018 09:34:59 +0100
Source: starjava-votable
Binary: starlink-votable-java starlink-votable-java-doc
Architecture: source
Version: 2.0+2018.10.31-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Astro Team <debian-astro-maintain...@lists.alioth.debian.org>
Changed-By: Ole Streicher <oleb...@debian.org>
Description:
 starlink-votable-java - Classes for VOTable input and output
 starlink-votable-java-doc - Classes for VOTable input and output (javadoc)
Closes: 912346
Changes:
 starjava-votable (2.0+2018.10.31-1) unstable; urgency=medium
 .
   * New upstream version 2.0+2018.10.31. Closes: #912346
   * Push Standards-Version to 4.2.1. No changes needed.
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