Bug#908683: marked as done (yt FTBFS on most architectures: ValueError: Data has no positive values, and therefore can not be log-scaled)

Mon, 26 Nov 2018 05:33:42 -0800 

Your message dated Mon, 26 Nov 2018 13:28:55 +0000
with message-id <[email protected]>
and subject line Bug#908683: fixed in yt 3.4.1-2
has caused the Debian Bug report #908683,
regarding yt FTBFS on most architectures: ValueError: Data has no positive 
values, and therefore can not be log-scaled
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
908683: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=908683
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message --- 
Source: yt
Version: 3.4.1-1
Severity: serious
Tags: ftbfs

https://buildd.debian.org/status/package.php?p=yt&suite=sid

...
======================================================================
ERROR: yt.frontends.stream.tests.test_stream_unstructured.test_multi_mesh
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/frontends/stream/tests/test_stream_unstructured.py",
 line 26, in test_multi_mesh
    sl = SlicePlot(ds, 'z', ('all', 'test'))
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 1953, in SlicePlot
    return AxisAlignedSlicePlot(ds, normal, fields, *args, **kwargs)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 1270, in __init__
    window_size=window_size, aspect=aspect, right_handed=right_handed)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 660, in __init__
    PlotWindow.__init__(self, *args, **kwargs)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 219, in __init__
    self._setup_plots()
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 845, in _setup_plots
    self.aspect, fig, axes, cax)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 1765, in __init__
    self._init_image(data, cbname, cblinthresh, cmap, extent, aspect)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/base_plot_types.py",
 line 251, in _init_image
    self.cb = self.figure.colorbar(self.image, self.cax)
  File "/usr/lib/python3/dist-packages/matplotlib/figure.py", line 2071, in 
colorbar
    cb = cbar.colorbar_factory(cax, mappable, **cb_kw)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 1399, in 
colorbar_factory
    cb = Colorbar(cax, mappable, **kwargs)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 945, in 
__init__
    ColorbarBase.__init__(self, ax, **kw)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 327, in 
__init__
    self.draw_all()
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 353, in 
draw_all
    self._config_axes(X, Y)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 461, in 
_config_axes
    self.update_ticks()
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 378, in 
update_ticks
    ticks, ticklabels, offset_string = self._ticker()
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 622, in 
_ticker
    b = np.array(locator())
  File "/usr/lib/python3/dist-packages/matplotlib/ticker.py", line 2089, in 
__call__
    return self.tick_values(vmin, vmax)
  File "/usr/lib/python3/dist-packages/matplotlib/ticker.py", line 2115, in 
tick_values
    "Data has no positive values, and therefore can not be "
ValueError: Data has no positive values, and therefore can not be log-scaled.

======================================================================
ERROR: yt.frontends.stream.tests.test_stream_unstructured.test_multi_field
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/frontends/stream/tests/test_stream_unstructured.py",
 line 46, in test_multi_field
    sl = SlicePlot(ds, 'z', 'test')
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 1953, in SlicePlot
    return AxisAlignedSlicePlot(ds, normal, fields, *args, **kwargs)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 1270, in __init__
    window_size=window_size, aspect=aspect, right_handed=right_handed)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 660, in __init__
    PlotWindow.__init__(self, *args, **kwargs)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 219, in __init__
    self._setup_plots()
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 845, in _setup_plots
    self.aspect, fig, axes, cax)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/plot_window.py",
 line 1765, in __init__
    self._init_image(data, cbname, cblinthresh, cmap, extent, aspect)
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build/yt/visualization/base_plot_types.py",
 line 251, in _init_image
    self.cb = self.figure.colorbar(self.image, self.cax)
  File "/usr/lib/python3/dist-packages/matplotlib/figure.py", line 2071, in 
colorbar
    cb = cbar.colorbar_factory(cax, mappable, **cb_kw)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 1399, in 
colorbar_factory
    cb = Colorbar(cax, mappable, **kwargs)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 945, in 
__init__
    ColorbarBase.__init__(self, ax, **kw)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 327, in 
__init__
    self.draw_all()
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 353, in 
draw_all
    self._config_axes(X, Y)
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 461, in 
_config_axes
    self.update_ticks()
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 378, in 
update_ticks
    ticks, ticklabels, offset_string = self._ticker()
  File "/usr/lib/python3/dist-packages/matplotlib/colorbar.py", line 622, in 
_ticker
    b = np.array(locator())
  File "/usr/lib/python3/dist-packages/matplotlib/ticker.py", line 2089, in 
__call__
    return self.tick_values(vmin, vmax)
  File "/usr/lib/python3/dist-packages/matplotlib/ticker.py", line 2115, in 
tick_values
    "Data has no positive values, and therefore can not be "
ValueError: Data has no positive values, and therefore can not be log-scaled.

----------------------------------------------------------------------
Ran 1167 tests in 2148.597s

FAILED (errors=2)
E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_yt/build; python3.6 -m nose 
dh_auto_test: pybuild --test --test-nose -i python{version} -p "3.7 3.6" 
returned exit code 13
make: *** [debian/rules:9: build-arch] Error 25

--- End Message ---
--- Begin Message --- 
Source: yt
Source-Version: 3.4.1-2

We believe that the bug you reported is fixed in the latest version of
yt, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Ole Streicher <[email protected]> (supplier of updated yt package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 26 Nov 2018 12:46:36 +0100
Source: yt
Binary: python-yt python3-yt
Architecture: source
Version: 3.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Astronomy Team 
<[email protected]>
Changed-By: Ole Streicher <[email protected]>
Description:
 python-yt  - Framework for analyzing and visualizing simulation data (Python 2
 python3-yt - Framework for analyzing and visualizing simulation data (Python 3
Closes: 892496 908683
Changes:
 yt (3.4.1-2) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Chris Lamb ]
   * Make the build reproducible (Closes: #892496)
 .
   [ Ben Keller ]
   * Added back testing code to debian/rules to fix FTBFS. Closes: #908683
Checksums-Sha1:
 1b6a04453d4daf82830d039932fd325485c9243c 2291 yt_3.4.1-2.dsc
 0b8f8c89f524a808ae7fe9b9eae5572aed51ff6f 38264 yt_3.4.1-2.debian.tar.xz
Checksums-Sha256:
 10a2b722b47d3240281e37dbc72c04652b9540f09ca1cb6626d17cae67f26d54 2291 
yt_3.4.1-2.dsc
 6f09bbd49aad56627228538e0878c0ccdf7c5c66eab6ce4a3b0a96fa04ddfd86 38264 
yt_3.4.1-2.debian.tar.xz
Files:
 6a3cc9c3481dc62035963f16c0e40075 2291 python optional yt_3.4.1-2.dsc
 83467fc5adf332f5aa0a275c9efa81c0 38264 python optional yt_3.4.1-2.debian.tar.xz

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--- End Message ---

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