Your message dated Sat, 23 Feb 2019 10:44:19 +0000
with message-id <[email protected]>
and subject line Bug#896189: fixed in mpich 3.3-2
has caused the Debian Bug report #896189,
regarding update-alternatives: error: /var/lib/dpkg/alternatives/mpi corrupt:
slave link same as main link /usr/bin/mpicc
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
896189: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=896189
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: openmpi-bin
Version: 3.0.1-6
Severity: serious
Control: affects -1 src:netpipe
https://buildd.debian.org/status/package.php?p=netpipe&suite=sid
...
Setting up libncurses5:i386 (6.1-1) ...
Setting up readline-common (7.0-3) ...
Setting up libevent-2.1-6:i386 (2.1.8-stable-4) ...
Setting up libevent-core-2.1-6:i386 (2.1.8-stable-4) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libgfortran4:i386 (7.3.0-16) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:i386 (2.12-2) ...
Setting up libreadline7:i386 (7.0-3) ...
Setting up libnuma1:i386 (2.0.11-2.1) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:i386 (2.56.1-2) ...
No schema files found: doing nothing.
Setting up libtinfo-dev:i386 (6.1-1) ...
Setting up gettext-base (0.19.8.1-6) ...
Setting up libpipeline1:i386 (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:i386 (57.1-9) ...
Setting up libbsd0:i386 (0.8.7-1) ...
Setting up libxml2:i386 (2.9.4+dfsg1-6.1) ...
Setting up libmagic-mgc (1:5.32-2) ...
Setting up libmagic1:i386 (1:5.32-2) ...
Setting up libcroco3:i386 (0.6.12-2) ...
Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ...
update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to
provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1)
in auto mode
Setting up libssl1.0.2:i386 (1.0.2o-1) ...
Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4) ...
Setting up openmpi-common (3.0.1-6) ...
Processing triggers for libc-bin (2.27-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libltdl7:i386 (2.4.6-2.1) ...
Setting up libpvm3:i386 (3.4.6-1+b3) ...
Setting up libgfortran-7-dev:i386 (7.3.0-16) ...
Setting up libreadline-dev:i386 (7.0-3) ...
Setting up libpciaccess0:i386 (0.14-1) ...
Setting up gfortran-7 (7.3.0-16) ...
Setting up libnuma-dev:i386 (2.0.11-2.1) ...
Setting up ocl-icd-libopencl1:i386 (2.2.12-1) ...
Setting up libkeyutils1:i386 (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write)
in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
auto mode
Setting up libnl-3-200:i386 (3.2.27-2) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up libfile-stripnondeterminism-perl (0.041-1) ...
Setting up libedit2:i386 (3.1-20170329-1) ...
Setting up gfortran (4:7.3.0-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in
auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in
auto mode
Setting up libmpich12:i386 (3.3~b2-3) ...
Setting up libltdl-dev:i386 (2.4.6-2.1) ...
Setting up gettext (0.19.8.1-6) ...
Setting up libnl-route-3-200:i386 (3.2.27-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-2) ...
Setting up libhwloc5:i386 (1.11.10-1) ...
Setting up libkrb5support0:i386 (1.16-2) ...
Setting up liblam4 (7.1.4-3.1) ...
Setting up libhwloc-plugins (1.11.10-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up lam4-dev (7.1.4-3.1) ...
update-alternatives: using /usr/include/lam to provide /usr/include/mpi (mpi)
in auto mode
update-alternatives: using /usr/share/man/man3/MPI_Comm_set_name_lam4-dev.3.gz
to provide /usr/share/man/man3/MPI_Comm_set_name.3.gz (MPI_Comm_set_name.3.gz)
in auto mode
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake
(automake) in auto mode
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2.1) ...
Setting up hwloc-nox (1.11.10-1) ...
Setting up libibverbs1:i386 (17.1-1) ...
Setting up mpich (3.3~b2-3) ...
update-alternatives: renaming mpi link from /usr/include/mpi to /usr/bin/mpicc
update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi)
in auto mode
update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun
(mpirun) in auto mode
Setting up libk5crypto3:i386 (1.16-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libhwloc-dev:i386 (1.11.10-1) ...
Setting up libpmix2:i386 (2.1.1~rc1-2) ...
Setting up librdmacm1:i386 (17.1-1) ...
Setting up libmpich-dev:i386 (3.3~b2-3) ...
Setting up ibverbs-providers:i386 (17.1-1) ...
Setting up libkrb5-3:i386 (1.16-2) ...
Setting up libibverbs-dev:i386 (17.1-1) ...
Setting up libfabric1 (1.5.3-1) ...
Setting up libgssapi-krb5-2:i386 (1.16-2) ...
Setting up openssh-client (1:7.7p1-2) ...
Setting up pvm (3.4.6-1+b3) ...
update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh
(pvm-rsh) in auto mode
Setting up libopenmpi3:i386 (3.0.1-6) ...
Setting up pvm-dev (3.4.6-1+b3) ...
Setting up openmpi-bin (3.0.1-6) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun
(mpirun) in auto mode
update-alternatives: error: /var/lib/dpkg/alternatives/mpi corrupt: slave link
same as main link /usr/bin/mpicc
dpkg: error processing package openmpi-bin (--configure):
installed openmpi-bin package post-installation script subprocess returned
error exit status 2
--- End Message ---
--- Begin Message ---
Source: mpich
Source-Version: 3.3-2
We believe that the bug you reported is fixed in the latest version of
mpich, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <[email protected]> (supplier of updated mpich package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 22 Feb 2019 16:45:42 +0000
Source: mpich
Binary: libmpich-dev libmpich12 libmpich12-dbgsym mpich mpich-dbgsym mpich-doc
Architecture: source amd64 all
Version: 3.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Alastair McKinstry <[email protected]>
Description:
libmpich-dev - Development files for MPICH
libmpich12 - Shared libraries for MPICH
mpich - Implementation of the MPI Message Passing Interface standard
mpich-doc - Documentation for MPICH
Closes: 896189
Changes:
mpich (3.3-2) unstable; urgency=medium
.
* Use dh_fortran_mod to install Fortran mod files in $fmoddir/mpich.
* B-D on gfortran | fortran-compiler
* Use f95, f77 aliases for Fortran compiler in d/rules
* Standards-Version: 4.3.0
* Update alternatives handling. Closes: #896189
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Files:
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libmpich-dev_3.3-2_amd64.deb
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libmpich12-dbgsym_3.3-2_amd64.deb
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libmpich12_3.3-2_amd64.deb
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mpich-dbgsym_3.3-2_amd64.deb
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