Your message dated Wed, 21 Aug 2019 09:04:20 +0000 with message-id <e1i0mxu-0006ls...@fasolo.debian.org> and subject line Bug#925735: fixed in libbpp-raa 2.4.1-2 has caused the Debian Bug report #925735, regarding libbpp-raa: ftbfs with GCC-9 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 925735: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925735 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libbpp-raa Version: 2.4.1-1 Severity: normal Tags: sid bullseye User: debian-...@lists.debian.org Usertags: ftbfs-gcc-9 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc9-20190321/libbpp-raa_2.4.1-1_unstable_gcc9.log The last lines of the build log are at the end of this report. To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-9/porting_to.html GCC 9 also passes the linker option --as-needed by default; typical build issues are passing libraries before object files to the linker, or underlinking of convenience libraries built from the same source. [...] --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-raa4/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.a debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4 debian/libbpp-raa4/usr/lib/x86_64-linux-gnu mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4.0.0 debian/libbpp-raa4/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-raa-dev PKGSHL=libbpp-raa4 install -d -m 755 debian/libbpp-raa-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-raa-dev/usr/include install -d -m 755 debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/<<PKGBUILDDIR>>' echo "Architecture amd64 is the only one where a symbols file is provided" Architecture amd64 is the only one where a symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libbpp-raa4/DEBIAN/symbols doesn't match completely debian/libbpp-raa4.symbols --- debian/libbpp-raa4.symbols (libbpp-raa4_2.4.1-1_amd64) +++ dpkg-gensymbolsMqy5ii 2019-03-26 16:58:28.951719660 +0000 @@ -17,6 +17,7 @@ _ZN3bpp17AlphabetExceptionD0Ev@Base 2.4.1 _ZN3bpp17AlphabetExceptionD1Ev@Base 2.4.1 _ZN3bpp17AlphabetExceptionD2Ev@Base 2.4.1 + _ZN3bpp20AbstractCoreSequence11setCommentsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base 2.4.1-1 _ZN3bpp3RAA10deleteListEPNS_7RaaListE@Base 2.4.1 _ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_@Base 2.4.1 _ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 @@ -76,10 +77,12 @@ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1 - _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 2.4.1 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 2.4.1-1 +#MISSING: 2.4.1-1# _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 2.4.1 _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base 2.4.1 _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 + _ZTv0_n72_N3bpp20AbstractCoreSequence11setCommentsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base 2.4.1-1 ajout_reponse@Base 2.4.1 aminoacids@Base 2.4.1 atoi_u@Base 2.4.1 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:12: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:8: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
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--- Begin Message ---Source: libbpp-raa Source-Version: 2.4.1-2 We believe that the bug you reported is fixed in the latest version of libbpp-raa, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 925...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libbpp-raa package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 21 Aug 2019 10:31:51 +0200 Source: libbpp-raa Binary: libbpp-raa-dev libbpp-raa4 Architecture: source Version: 2.4.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libbpp-raa-dev - Bio++ Remote Acnuc Access library development files libbpp-raa4 - Bio++ Remote Acnuc Access library Closes: 925735 Changes: libbpp-raa (2.4.1-2) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Andreas Tille ] * Rebuild for new version of gcc to fix symbols Closes: #925735 * Provide symbols file for amd64 only * debhelper-compat 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright * Set upstream metadata fields: Contact, Name. Checksums-Sha1: 192b810a5904ed7b23e586c888deb250371940ea 2152 libbpp-raa_2.4.1-2.dsc 8762b145fa4300d9e46f0293de8aac85fec7a08d 11456 libbpp-raa_2.4.1-2.debian.tar.xz Checksums-Sha256: c6a58f12d7d5c685e9138047d19e57b11d1956430fa3bab1887cbe44af823ed1 2152 libbpp-raa_2.4.1-2.dsc acd35b4cab62ed5d8d40353f7f3d7e41570bf41ac9e16740c5c01a7049575d9f 11456 libbpp-raa_2.4.1-2.debian.tar.xz Files: 37f574f54cd582557b80012dadabdcef 2152 science optional libbpp-raa_2.4.1-2.dsc 5afc01598e75d69064c4ae79d7bf1f2f 11456 science optional libbpp-raa_2.4.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1dBM8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEKow/6A71bqxi4nQ32/aPCR1n0zMvDMsTcthzf LAo7Qnme7Rct0zjbg+uCzmX2UEOzoc7vtS4vuk3cMP6IWJ82lVIP/9eeSceSgSUj /wF5rSVDyerlUhYZruoI9MY+QgPtPrBLQVYJGyOI3gPeQFSunRVYKf20fmny7nrO mPng8PIDJ9r+dh5d0pubKXPSAdwAA3U64etskVhejBE1QzylGXizefB2MwiI+GCl DwohQpd8F5ElnowIHMMi3u3KMgd1rG5yKA2d47uT+sqxu6YX4RNru+wD+Bb8IZSu jBfYW6IAIG20jw7zDznASFE7C6InT2RzkIy6u/uoEE9rXYmsjVEAqpa48UEYp5em 5K/9Fo5eVnwq/87oNuw7ho/q7XOBUSAWwl6sBccIbKVL0hXoCpOISx+MmvZZ93zX zfT2HT0CdrSAfkPzY/i4RqiyNvqo8dfrZ6csUsl+Qe75cfio3NYhQA/rv0OQ/xfe NlE5e5zDh3gw919ryYwZR2V+oRy45vHVR9ve1FMFqsNLDSX/kkUx9QFqEp0zirWS Hivkl+ftpp73SwNLiMcbwEj6+uvMf3EAtVbvVw0uk5tJO0fAW3aJ57/6uaQltCSc hVsgySaDju5d2VJioxFCnmKHFZGqALj3Ik8FlIDHTbV9bEp/F2wxNogPu4kYkU3P CL3yreOIxPs= =zOoB -----END PGP SIGNATURE-----
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