On Fri, Sep 06, 2019 at 02:30:25PM +0200, Andreas Tille wrote:
> Now I see at least a flash of a window before I get:
>
> $ MicrobeGPS
> libpng warning: iCCP: known incorrect sRGB profile
> libpng warning: iCCP: known incorrect sRGB profile
> libpng warning: iCCP: known incorrect sRGB profile
> Traceback (most recent call last):
> File "/usr/lib/python3/dist-packages/microbegps/gui.py", line 1571, in run
> nodes,ranks =
> taxonomy.parse_nodes_dmp(pkg_resources.resource_stream('microbegps','data/taxonomy/nodes.dmp'))
> File "/usr/lib/python3/dist-packages/microbegps/taxonomy.py", line 15, in
> parse_nodes_dmp
> fields = line.rstrip('\t|\n').split('\t|\t')
> TypeError: a bytes-like object is required, not 'str'That is because resource_stream() returns stream in binary mode, not text: https://setuptools.readthedocs.io/en/latest/pkg_resources.html#basic-resource-access Try adding .decode('utf-8'): fields = line.decode('utf-8').rstrip('\t|\n').split('\t|\t') > During handling of the above exception, another exception occurred: > > Traceback (most recent call last): > File "/usr/lib/python3/dist-packages/microbegps/gui.py", line 1573, in run > self.failed.emit('<b><font color="DarkRed">Error loading NCBI > taxonomy!</font></b><br>Message: <i>'+e.message+'</i>') > AttributeError: 'TypeError' object has no attribute 'message' Use str(e) instead of e.message. -- Dmitry Shachnev
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