Your message dated Sat, 12 Oct 2019 22:00:58 +0000 with message-id <[email protected]> and subject line Bug#940108: fixed in nexus 4.4.3-1 has caused the Debian Bug report #940108, regarding nexus: FTBFS with mxml 3 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 940108: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=940108 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: nexus Version: 4.3.2-svn1921-6 Severity: serious Tags: ftbfs Justification: fails to build from source With the Java 9 fix applied (#893383) nexus still fails to build, I assume due to more strict checks by GCC 9: /bin/bash ../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -DHDF5 -DH5_NO_DEPRECATED_SYMBOLS -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Pinsert_vers=2 -DH5Pregister_vers=2 -DH5Rget_obj_type_vers=2 -DH5Tarray_create_vers=2 -DH5Tcommit_vers=2 -DH5Tget_array_dims_vers=2 -DH5Topen_vers=2 -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fno-common -DHAVE_NAPICONFIG_H -prefer-pic -g -O2 -fdebug-prefix-map=/build/nexus-4.3.2-svn1921=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -MT nxxml.lo -MD -MP -MF .deps/nxxml.Tpo -c -o nxxml.lo nxxml.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I/usr/include/hdf -DHDF4 -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -DHDF5 -DH5_NO_DEPRECATED_SYMBOLS -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Pinsert_vers=2 -DH5Pregister_vers=2 -DH5Rget_obj_type_vers=2 -DH5Tarray_create_vers=2 -DH5Tcommit_vers=2 -DH5Tget_array_dims_vers=2 -DH5Topen_vers=2 -I/usr/include -DNXXML -DIN_NEXUS_LIBRARY=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fno-common -DHAVE_NAPICONFIG_H -g -O2 -fdebug-prefix-map=/build/nexus-4.3.2-svn1921=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -MT nxxml.lo -MD -MP -MF .deps/nxxml.Tpo -c nxxml.c -fPIC -DPIC -o .libs/nxxml.o nxxml.c: In function 'searchGroupLinks': nxxml.c:305:21: error: dereferencing pointer to incomplete type 'mxml_node_t' {aka 'struct _mxml_node_s'} 305 | if(strcmp(test->value.element.name,nxclass) == 0){ | ^~ nxxml.c: In function 'NXXmakedatatable64': nxxml.c:486:46: error: invalid application of 'sizeof' to incomplete type 'mxml_node_t' {aka 'struct _mxml_node_s'} 486 | newData = (mxml_node_t *)malloc(sizeof(mxml_node_t)); | ^~~~~~~~~~~ nxxml.c:491:31: error: invalid application of 'sizeof' to incomplete type 'mxml_node_t' {aka 'struct _mxml_node_s'} 491 | memset(newData,0,sizeof(mxml_node_t)); | ^~~~~~~~~~~ nxxml.c: In function 'NXXmakedata64': nxxml.c:555:44: error: invalid application of 'sizeof' to incomplete type 'mxml_node_t' {aka 'struct _mxml_node_s'} 555 | newData = (mxml_node_t *)malloc(sizeof(mxml_node_t)); | ^~~~~~~~~~~ nxxml.c:560:29: error: invalid application of 'sizeof' to incomplete type 'mxml_node_t' {aka 'struct _mxml_node_s'} 560 | memset(newData,0,sizeof(mxml_node_t)); | ^~~~~~~~~~~ make[2]: *** [Makefile:606: nxxml.lo] Error 1
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--- Begin Message ---Source: nexus Source-Version: 4.4.3-1 We believe that the bug you reported is fixed in the latest version of nexus, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Stuart Prescott <[email protected]> (supplier of updated nexus package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 24 Sep 2019 23:33:22 +1000 Source: nexus Binary: libnexus-dev libnexus-java libnexus-jni libnexus-jni-dbgsym libnexus1 libnexus1-dbgsym nexus-tools nexus-tools-dbgsym Architecture: source amd64 all Version: 4.4.3-1 Distribution: experimental Urgency: medium Maintainer: Debian Science Team <[email protected]> Changed-By: Stuart Prescott <[email protected]> Description: libnexus-dev - NeXus scientific data file format - development libraries libnexus-java - NeXus scientific data file format - java libraries libnexus-jni - NeXus scientific data file format - JNI library libnexus1 - NeXus scientific data file format - runtime libraries nexus-tools - NeXus scientific data file format - applications Closes: 893383 896357 937134 940108 Changes: nexus (4.4.3-1) experimental; urgency=medium . * New upstream release. - drop patches incorporated upstream. - drop patches for old build system. - change to cmake build system. - drop python-nxs package that is now a separate source (Closes: #896357, #937134). - stop building against MXML 3.0 until compatibility can be restored (Closes: #940108). - patch build system to handle newer Java (Closes: #893383). * Use debhelper-compat 12. * Update Standards-Version to 4.4.0 (no changes required). * Add autopkgtest tests. * Set Rules-Requires-Root: no. * Add myself to Uploaders. Checksums-Sha1: e2238db1e9d5af52e9365a8f2a39fb317f21eec6 2344 nexus_4.4.3-1.dsc d2f1eed9d86fea1bf3522f72f97d76b7d43823a3 4821150 nexus_4.4.3.orig.tar.gz 7e6f179c075855f9c38f65fcf0e5c601e1b34be0 10056 nexus_4.4.3-1.debian.tar.xz 98307aa7ef3cfb652fa58f3ea7372f17f12f6320 137872 libnexus-dev_4.4.3-1_amd64.deb 4a92b07ea7dfad6fb0a7c48f3d74ba3ff925db22 304044 libnexus-java_4.4.3-1_all.deb 2c41e9c35045ecea9bf16bc99f2ff8401699c6e4 44972 libnexus-jni-dbgsym_4.4.3-1_amd64.deb f863af43b5435a04a565aee2f726f15f431ac819 16828 libnexus-jni_4.4.3-1_amd64.deb 23c6d52c19eca703e73b2446d3b8e3e9101234cc 993468 libnexus1-dbgsym_4.4.3-1_amd64.deb acc2df47ee08b3377239fc6bfb4eb06e6fcee2c3 101220 libnexus1_4.4.3-1_amd64.deb d9910bae57d884314087c6ba20b7ec872044db1f 4946360 nexus-tools-dbgsym_4.4.3-1_amd64.deb 8fb05d8df3916e20be0756acdcb36b56c5951c95 322076 nexus-tools_4.4.3-1_amd64.deb 893f4c0621144aa3581d0a65a4b1fcd752361e1d 11381 nexus_4.4.3-1_amd64.buildinfo Checksums-Sha256: d20b7ac9a0e810a1c4e498f9905e42eab8bee7cf3496ea682efe31ba2148bd81 2344 nexus_4.4.3-1.dsc e78a116feb2ebd04de31a8d8707c65e8e15a64aa8999a40fea305e3909bd6533 4821150 nexus_4.4.3.orig.tar.gz 260ee3093e2f5c06889dc357945a8de24c10782598c5fd94215424d08093355c 10056 nexus_4.4.3-1.debian.tar.xz 8985e16ea874b93516f92a02c78d9db6f9f1ed6f95a5702f345deda9bb59fcd7 137872 libnexus-dev_4.4.3-1_amd64.deb e56e3974fb144f134745b2cb09f004d18c73196df56ea9875b2d657ea8794f09 304044 libnexus-java_4.4.3-1_all.deb 8552d08bf0f090cddc388a9a6f46886ad273836816b0256084636c0ab89bb8cf 44972 libnexus-jni-dbgsym_4.4.3-1_amd64.deb 7ccd0206092ccfec89fddd13ba60f275b8c9af1ac5220c5855235a2c0ead2250 16828 libnexus-jni_4.4.3-1_amd64.deb ac4e26cf3a312fcd8cd1e1b37a300857733bf52efc48f782b18865b66f546d55 993468 libnexus1-dbgsym_4.4.3-1_amd64.deb 96582b10a9bb09ae3de84740cddc716f48a105b9e6861bc9e3154beaaee0923f 101220 libnexus1_4.4.3-1_amd64.deb 4aa79d53463e7a52f23dddc61dc610b72e295c2e78e3673f2a2d0aa98da686d4 4946360 nexus-tools-dbgsym_4.4.3-1_amd64.deb c1df290e7a0c6a33ac55b0443dcbd2546c4e5473674d1892d2941078d742e5c9 322076 nexus-tools_4.4.3-1_amd64.deb e77fff1c68f2f667c043c74c320e784bf83fdb810d599f98783d3379d4a738ed 11381 nexus_4.4.3-1_amd64.buildinfo Files: 911c06d989b2790ed6fc178b2c984c4c 2344 science optional nexus_4.4.3-1.dsc 51016616c0af18d14b34018da476c326 4821150 science optional nexus_4.4.3.orig.tar.gz 5270013216756237e94bc7ce87a66e3c 10056 science optional nexus_4.4.3-1.debian.tar.xz ef039bbb9e588a99f9c13dc533506745 137872 libdevel optional libnexus-dev_4.4.3-1_amd64.deb 71cdc971d108fddf67e31fadeb5823b6 304044 java optional libnexus-java_4.4.3-1_all.deb dfeb5d7e2a217f75ee750f345e9f72a7 44972 debug optional libnexus-jni-dbgsym_4.4.3-1_amd64.deb c7200d65c244f7c40fe0ec4310c8c8c4 16828 java optional libnexus-jni_4.4.3-1_amd64.deb 00093dafdd6d9f9fd4d48b8f703d0a0f 993468 debug optional libnexus1-dbgsym_4.4.3-1_amd64.deb b87090efc30f0cfaf4e14fe8208c50c3 101220 libs optional libnexus1_4.4.3-1_amd64.deb 7df59cf6e33f3549894f60094729f334 4946360 debug optional nexus-tools-dbgsym_4.4.3-1_amd64.deb d704b8372603ee527fc5ca1b9cc07d4e 322076 science optional nexus-tools_4.4.3-1_amd64.deb aaf2ddc073bf5a193dbc074b1af74fdf 11381 science optional nexus_4.4.3-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEkOLSwa0Uaht+u4kdu8F+uxOW8vcFAl2KJCUACgkQu8F+uxOW 8veqJQ//aBxPONvwYDRpfHG5TPt+NBrhVfQDXGx3MO4PUai0QsyD4lRvKxPrrqg0 dBWeDrmtegCRIA1IhUw1DDUDrWa2K7Pt0ifWp8rjBDHreqTMgziYWpCGy7c1idR6 g0DKsou/oCz9wPjl0UWExxwB6SG1h4seYOMBdA1tNzysdpLxLC/WqpOvbre2gczT L9M7vFtwRINYlmNd9b0AlbHVKImZcugc7PuQfywVfmBhYLxdbwfZ+eNo+5SN1o/f aOkOdh30H11RSbySHaaVCtdbLSJT1Ip9DZ+e9dykaSZ/pST1bbYVUTyx4lIrRiCs shq/Xy1qhMNyJ3haMV/tYrlVA6shKjguZX4iPfJt97j1eV2rs9nt2RZRhyRLnpHe gT7FwbjRVN97COAXUTcx0JOmapNrEbCE5NvLe86TQXVR1I6Sjf4mE3QiOT3wOklP dMAJVubRv/aBfFU/g2daqVgV9/AyQNeMrapsddkSzqmPv1nBBNEGQywHLPD15AYo TjTMAoRTN7g8k52rSlwYruOc1sLAxW8tPwq9Gz/WABE+0B5VQpa9QNGhODi/J3o8 sPBWZk7iV1ib5zCsV5aJfY2IUhZKaRaKThNCA0bHZJWBPA6yfL0GfhMUNZ9r0Eat sDA4XIRrIi+Ob6jOy722ZkKykyPN6R3XUtG2ZzCid4OJzS38ZBI= =rVDP -----END PGP SIGNATURE-----
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