Your message dated Tue, 15 Oct 2019 16:20:08 +0000
with message-id <e1ikpyo-000cuc...@fasolo.debian.org>
and subject line Bug#940279: fixed in wham-align 0.1.5-2
has caused the Debian Bug report #940279,
regarding wham-align: FTBFS with GCC 9: undefined reference to `pthread_create'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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immediately.)
--
940279: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=940279
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: wham-align
Version: 0.1.5-1
Severity: serious
Tags: bullseye sid
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-9
Hi Maintainer
As can be seen on reproducible builds [1], wham-align FTBFS with GCC 9.
Regards
Graham
[1]
g++ -lpthread -o wham sequence.o hash.o embedhash.o main.o aligner.o
interval.o edit_distance.o error.o short.o hitset.o model.o
perfcounters.o writer.o
g++ -lpthread -o wham-build sequence.o hash.o embedhash.o builder.o
aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o
perfcounters.o writer.o
/usr/bin/ld: main.o: in function `align(char*, AlignInfo*, char*, int)':
./main.cpp:466: undefined reference to `pthread_create'
/usr/bin/ld: ./main.cpp:466: undefined reference to `pthread_create'
/usr/bin/ld: ./main.cpp:475: undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make[1]: *** [makefile:19: wham] Error 1
make[1]: Leaving directory '/build/1st/wham-align-0.1.5'
dh_auto_build: make -j16 "INSTALL=install --strip-program=true"
returned exit code 2
--- End Message ---
--- Begin Message ---
Source: wham-align
Source-Version: 0.1.5-2
We believe that the bug you reported is fixed in the latest version of
wham-align, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 940...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moel...@debian.org> (supplier of updated wham-align package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 15 Oct 2019 17:55:46 +0200
Source: wham-align
Architecture: source
Version: 0.1.5-2
Distribution: unstable
Urgency: medium
Maintainer: Steffen Moeller <moel...@debian.org>
Changed-By: Steffen Moeller <moel...@debian.org>
Closes: 940279
Changes:
wham-align (0.1.5-2) unstable; urgency=medium
.
* Fixed gcc-9 build failure (Closes: #940279)
* d/u/metadata: Added ref to conda
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