Your message dated Tue, 12 Nov 2019 17:22:24 +0000
with message-id <e1iuzs0-000gad...@fasolo.debian.org>
and subject line Bug#940564: fixed in racon 1.4.10-1
has caused the Debian Bug report #940564,
regarding racon: FTBFS against libspoa3
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
940564: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=940564
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: racon
Version: 1.3.2-1
Severity: serious
Hi Maintainer
In a recent binNMU against libspoa3 [1], racon FTBFS with the errors below.
Regards
Graham
[1]
https://buildd.debian.org/status/fetch.php?pkg=racon&arch=amd64&ver=1.3.2-1%2Bb2&stamp=1566980028&raw=0
/usr/bin/c++ -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/config
-I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=gnu++11 -o
CMakeFiles/racon.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
/<<PKGBUILDDIR>>/src/polisher.cpp: In member function ‘void
racon::Polisher::initialize()’:
/<<PKGBUILDDIR>>/src/polisher.cpp:169:15: error: ‘class
bioparser::Parser<racon::Sequence>’ has no member named ‘parse_objects’
169 | tparser_->parse_objects(sequences_, -1);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/polisher.cpp:196:33: error: ‘class
bioparser::Parser<racon::Sequence>’ has no member named ‘parse_objects’
196 | auto status = sparser_->parse_objects(sequences_,
kChunkSize);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/polisher.cpp:277:33: error: ‘class
bioparser::Parser<racon::Overlap>’ has no member named ‘parse_objects’
277 | auto status = oparser_->parse_objects(overlaps,
kChunkSize);
| ^~~~~~~~~~~~~
...
/<<PKGBUILDDIR>>/src/window.cpp: In member function ‘bool
racon::Window::generate_consensus(std::shared_ptr<spoa::AlignmentEngine>)’:
/<<PKGBUILDDIR>>/src/window.cpp:89:43: error: ‘using element_type =
class spoa::AlignmentEngine’ {aka ‘class spoa::AlignmentEngine’} has no
member named ‘align_sequence_with_graph’
89 | alignment =
alignment_engine->align_sequence_with_graph(
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/window.cpp:95:43: error: ‘using element_type =
class spoa::AlignmentEngine’ {aka ‘class spoa::AlignmentEngine’} has no
member named ‘align_sequence_with_graph’
95 | alignment =
alignment_engine->align_sequence_with_graph(
| ^~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: *** [CMakeFiles/racon.dir/build.make:118:
CMakeFiles/racon.dir/src/window.cpp.o] Error 1
--- End Message ---
--- Begin Message ---
Source: racon
Source-Version: 1.4.10-1
We believe that the bug you reported is fixed in the latest version of
racon, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 940...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated racon package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 12 Nov 2019 14:43:58 +0100
Source: racon
Architecture: source
Version: 1.4.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Closes: 940564
Changes:
racon (1.4.10-1) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.4.0
* Point watch file to new location
* New homepage
* Versioned Build-Depends: libthread-pool-dev (>= 2)
.
[ Michael Crusoe ]
* New upstream version Closes: #940564
* Run the tests during the build
* Run the tests as part of 'autopkgtest'ing
* Set the racon_wrapper to use /usr/bin/rampler
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Files:
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