Source: sra-sdk Version: 2.9.3+dfsg-1 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200225 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. This rebuild was done by building only architecture:any binary packages (binary-arch target of debian/rules). Relevant part (hopefully): > gcc -static-libgcc -o > /<<PKGBUILDDIR>>/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/rcexplain.2.9.3 > -DNDEBUG -m64 -Wl,-z,relro -Wl,-z,now rcexplain.o > -L/<<PKGBUILDDIR>>/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib > -L/<<PKGBUILDDIR>>/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib > -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu > -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl > -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls > -lmbedcrypto > ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be > preloaded (cannot open shared object file): ignored. > ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be > preloaded (cannot open shared object file): ignored. > ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be > preloaded (cannot open shared object file): ignored. > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_entropy_init' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_decrypt' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_base64_encode' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_ctr_drbg_random' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_aes_free' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_ctr_drbg_free' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_free' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_update' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_init' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_aes_init' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_parse_key' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_hmac' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_setup' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_parse_public_key' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_encrypt' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_aes_setkey_dec' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_init' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_get_len' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_hmac_update' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_ctr_drbg_init' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_ctr_drbg_seed' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_x509_crt_parse_path' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_free' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_aes_crypt_cbc' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_rsa' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_x509_crt_parse_file' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_finish' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_hmac_starts' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_entropy_free' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_pk_parse_keyfile' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_info_from_type' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_rsa_rsassa_pkcs1_v15_sign' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_get_size' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_hmac_finish' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_rsa_rsassa_pkcs1_v15_verify' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_aes_setkey_enc' > /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to > `vdb_mbedtls_md_starts' > collect2: error: ld returned 1 exit status The full build log is available from: http://qa-logs.debian.net/2020/02/25/sra-sdk_2.9.3+dfsg-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
