Source: python-biom-format Version: 2.1.8+dfsg-1 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200402 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > # arch > USE_CYTHON=true dh_auto_build > pybuild --build --test-nose -i python{version} -p "3.7 3.8" > I: pybuild base:217: /usr/bin/python3.7 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/parse.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/err.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/exception.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > copying biom/tests/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > copying biom/tests/test_util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > copying biom/tests/long_lines.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > copying biom/tests/test_err.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > copying biom/tests/test_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > copying biom/tests/test_parse.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_validator.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_subsetter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_normalizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_ids.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/uc_processor.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_summarizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/metadata_exporter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_head.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/metadata_adder.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/table_converter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > copying biom/cli/installation_informer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/cli > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_show_install_info.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_table_normalizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_table_converter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_add_metadata.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_subset_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_uc_processor.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_summarize_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_validate_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli > running egg_info > creating biom_format.egg-info > writing biom_format.egg-info/PKG-INFO > writing dependency_links to biom_format.egg-info/dependency_links.txt > writing entry points to biom_format.egg-info/entry_points.txt > writing requirements to biom_format.egg-info/requires.txt > writing top-level names to biom_format.egg-info/top_level.txt > writing manifest file 'biom_format.egg-info/SOURCES.txt' > reading manifest file 'biom_format.egg-info/SOURCES.txt' > reading manifest template 'MANIFEST.in' > warning: no directories found matching 'support_files' > warning: no directories found matching 'tests/test_data' > no previously-included directories found matching 'docs/_build' > warning: no previously-included files matching '*.pyc' found anywhere in > distribution > warning: no previously-included files matching '*.pyo' found anywhere in > distribution > warning: no previously-included files matching '.git' found anywhere in > distribution > warning: no previously-included files matching '*.so' found anywhere in > distribution > warning: no previously-included files matching '.*.swp' found anywhere in > distribution > writing manifest file 'biom_format.egg-info/SOURCES.txt' > copying biom/_filter.c -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/_filter.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/_subsample.c -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/_subsample.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/_transform.c -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > copying biom/_transform.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/assets > copying biom/assets/exercise_api.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/assets > copying biom/assets/exercise_cli.sh -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/assets > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables > copying biom/tests/test_data/bad_table.txt -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/bad_table.txt.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/empty.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/no-contents.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.json.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/test.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/test.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data > running build_ext > building 'biom._filter' extension > creating build > creating build/temp.linux-x86_64-3.7 > creating build/temp.linux-x86_64-3.7/biom > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m > -c biom/_filter.c -o build/temp.linux-x86_64-3.7/biom/_filter.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_filter.c:617: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions > -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.7/biom/_filter.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-x86_64-linux-gnu.so > building 'biom._transform' extension > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m > -c biom/_transform.c -o build/temp.linux-x86_64-3.7/biom/_transform.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_transform.c:617: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions > -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.7/biom/_transform.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-x86_64-linux-gnu.so > building 'biom._subsample' extension > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m > -c biom/_subsample.c -o build/temp.linux-x86_64-3.7/biom/_subsample.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_subsample.c:617: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions > -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.7/biom/_subsample.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-x86_64-linux-gnu.so > I: pybuild base:217: /usr/bin/python3 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/parse.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/err.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/exception.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > copying biom/tests/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > copying biom/tests/test_util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > copying biom/tests/long_lines.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > copying biom/tests/test_err.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > copying biom/tests/test_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > copying biom/tests/test_parse.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_validator.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_subsetter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_normalizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_ids.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/uc_processor.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_summarizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/metadata_exporter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_head.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/metadata_adder.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/table_converter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > copying biom/cli/installation_informer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_show_install_info.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_table_normalizer.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_table_converter.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_add_metadata.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_subset_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_uc_processor.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_summarize_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > copying biom/tests/test_cli/test_validate_table.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli > running egg_info > writing biom_format.egg-info/PKG-INFO > writing dependency_links to biom_format.egg-info/dependency_links.txt > writing entry points to biom_format.egg-info/entry_points.txt > writing requirements to biom_format.egg-info/requires.txt > writing top-level names to biom_format.egg-info/top_level.txt > reading manifest file 'biom_format.egg-info/SOURCES.txt' > reading manifest template 'MANIFEST.in' > warning: no directories found matching 'support_files' > warning: no directories found matching 'tests/test_data' > no previously-included directories found matching 'docs/_build' > warning: no previously-included files matching '*.pyc' found anywhere in > distribution > warning: no previously-included files matching '*.pyo' found anywhere in > distribution > warning: no previously-included files matching '.git' found anywhere in > distribution > warning: no previously-included files matching '*.so' found anywhere in > distribution > warning: no previously-included files matching '.*.swp' found anywhere in > distribution > writing manifest file 'biom_format.egg-info/SOURCES.txt' > copying biom/_filter.c -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/_filter.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/_subsample.c -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/_subsample.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/_transform.c -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > copying biom/_transform.pyx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/assets > copying biom/assets/exercise_api.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/assets > copying biom/assets/exercise_cli.sh -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/assets > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables > copying biom/tests/test_data/bad_table.txt -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/bad_table.txt.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/empty.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/no-contents.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > copying biom/tests/test_data/test.json.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/test.biom -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data > copying biom/tests/test_cli/test_data/test.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data > running build_ext > building 'biom._filter' extension > creating build/temp.linux-x86_64-3.8 > creating build/temp.linux-x86_64-3.8/biom > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 > -c biom/_filter.c -o build/temp.linux-x86_64-3.8/biom/_filter.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_filter.c:617: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions > -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.8/biom/_filter.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/_filter.cpython-38-x86_64-linux-gnu.so > building 'biom._transform' extension > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 > -c biom/_transform.c -o build/temp.linux-x86_64-3.8/biom/_transform.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_transform.c:617: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions > -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.8/biom/_transform.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/_transform.cpython-38-x86_64-linux-gnu.so > building 'biom._subsample' extension > x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g > -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat > -Werror=format-security -g -fwrapv -O2 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -I/usr/lib/python3/dist-packages/numpy/core/include > -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 > -c biom/_subsample.c -o build/temp.linux-x86_64-3.8/biom/_subsample.o > In file included from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from > /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, > from biom/_subsample.c:617: > /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: > warning: #warning "Using deprecated NumPy API, disable it with " "#define > NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ > x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions > -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-3.8/biom/_subsample.o -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/_subsample.cpython-38-x86_64-linux-gnu.so > # indep: > PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html > Running Sphinx v1.8.5 > making output directory... > [autosummary] generating autosummary for: BIOM_LICENSE.rst, > documentation/adding_metadata.rst, documentation/biom_conversion.rst, > documentation/biom_format.rst, documentation/index.rst, > documentation/quick_usage_examples.rst, > documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, > index.rst > Failed to import 'biom.table': no module named biom.table > Failed to import 'biom': no module named biom > building [mo]: targets for 0 po files that are out of date > building [html]: targets for 12 source files that are out of date > updating environment: 12 added, 0 changed, 0 removed > reading sources... [ 8%] BIOM_LICENSE > reading sources... [ 16%] documentation/adding_metadata > reading sources... [ 25%] documentation/biom_conversion > reading sources... [ 33%] documentation/biom_format > reading sources... [ 41%] documentation/format_versions/biom-1.0 > reading sources... [ 50%] documentation/format_versions/biom-2.0 > reading sources... [ 58%] documentation/format_versions/biom-2.1 > reading sources... [ 66%] documentation/index > reading sources... [ 75%] documentation/quick_usage_examples > reading sources... [ 83%] documentation/summarizing_biom_tables > reading sources... [ 91%] documentation/table_objects > reading sources... [100%] index > > WARNING: autodoc: failed to import module 'biom'; the following exception was > raised: > No module named 'matplotlib' > WARNING: autodoc: failed to import module 'table' from module 'biom'; the > following exception was raised: > No module named 'matplotlib' > looking for now-outdated files... none found > pickling environment... done > checking consistency... done > preparing documents... done > writing output... [ 8%] BIOM_LICENSE > writing output... [ 16%] documentation/adding_metadata > writing output... [ 25%] documentation/biom_conversion > writing output... [ 33%] documentation/biom_format > writing output... [ 41%] documentation/format_versions/biom-1.0 > writing output... [ 50%] documentation/format_versions/biom-2.0 > writing output... [ 58%] documentation/format_versions/biom-2.1 > writing output... [ 66%] documentation/index > writing output... [ 75%] documentation/quick_usage_examples > writing output... [ 83%] documentation/summarizing_biom_tables > writing output... [ 91%] documentation/table_objects > writing output... [100%] index > > /<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains > reference to document 'documentation/quick_usage_examples' that doesn't have > a title: no link will be generated > /<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains > reference to document 'documentation/table_objects' that doesn't have a > title: no link will be generated > /<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains > reference to document 'documentation/quick_usage_examples' that doesn't have > a title: no link will be generated > /<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains > reference to document 'documentation/table_objects' that doesn't have a > title: no link will be generated > generating indices... > writing additional pages... search > copying images... [100%] _static/biom-format.png > > copying static files... done > copying extra files... done > dumping search index in English (code: en) ... done > dumping object inventory... done > build succeeded, 6 warnings. > > The HTML pages are in build/html. > PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man > Running Sphinx v1.8.5 > making output directory... > [autosummary] generating autosummary for: BIOM_LICENSE.rst, > documentation/adding_metadata.rst, documentation/biom_conversion.rst, > documentation/biom_format.rst, documentation/index.rst, > documentation/quick_usage_examples.rst, > documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, > index.rst > Failed to import 'biom.table': no module named biom.table > Failed to import 'biom': no module named biom > building [mo]: targets for 0 po files that are out of date > building [man]: all manpages > updating environment: 12 added, 0 changed, 0 removed > reading sources... [ 8%] BIOM_LICENSE > reading sources... [ 16%] documentation/adding_metadata > reading sources... [ 25%] documentation/biom_conversion > reading sources... [ 33%] documentation/biom_format > reading sources... [ 41%] documentation/format_versions/biom-1.0 > reading sources... [ 50%] documentation/format_versions/biom-2.0 > reading sources... [ 58%] documentation/format_versions/biom-2.1 > reading sources... [ 66%] documentation/index > reading sources... [ 75%] documentation/quick_usage_examples > reading sources... [ 83%] documentation/summarizing_biom_tables > reading sources... [ 91%] documentation/table_objects > reading sources... [100%] index > > WARNING: autodoc: failed to import module 'biom'; the following exception was > raised: > No module named 'matplotlib' > WARNING: autodoc: failed to import module 'table' from module 'biom'; the > following exception was raised: > No module named 'matplotlib' > looking for now-outdated files... none found > pickling environment... done > checking consistency... done > writing... biom.1 { documentation/index documentation/biom_format > documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 > documentation/format_versions/biom-2.1 documentation/quick_usage_examples > documentation/table_objects documentation/biom_conversion > documentation/adding_metadata documentation/summarizing_biom_tables > BIOM_LICENSE } > build succeeded, 2 warnings. > > The manual pages are in build/man. > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_auto_test -O--buildsystem=pybuild > pybuild --test --test-nose -i python{version} -p "3.7 3.8" > I: pybuild pybuild:284: cp -r /<<PKGBUILDDIR>>/examples > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build > I: pybuild base:217: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build; python3.7 -m nose > -v > Failure: ModuleNotFoundError (No module named 'matplotlib') ... ERROR > > ====================================================================== > ERROR: Failure: ModuleNotFoundError (No module named 'matplotlib') > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest > raise self.exc_val.with_traceback(self.tb) > File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in > loadTestsFromName > addr.filename, addr.module) > File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in > importFromPath > return self.importFromDir(dir_path, fqname) > File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in > importFromDir > mod = load_module(part_fqname, fh, filename, desc) > File "/usr/lib/python3.7/imp.py", line 244, in load_module > return load_package(name, filename) > File "/usr/lib/python3.7/imp.py", line 216, in load_package > return _load(spec) > File "<frozen importlib._bootstrap>", line 696, in _load > File "<frozen importlib._bootstrap>", line 677, in _load_unlocked > File "<frozen importlib._bootstrap_external>", line 728, in exec_module > File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/__init__.py", > line 53, in <module> > from .table import Table > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build/biom/table.py", > line 189, in <module> > import pandas as pd > File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in > <module> > import pandas.testing > File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module> > from pandas.util.testing import ( > File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in > <module> > from matplotlib.cbook import MatplotlibDeprecationWarning > ModuleNotFoundError: No module named 'matplotlib' > > ---------------------------------------------------------------------- > Ran 1 test in 0.360s > > FAILED (errors=1) > E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_biom-format/build; python3.7 -m nose > -v > dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 > 3.8" returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2020/04/02/python-biom-format_2.1.8+dfsg-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.