Your message dated Mon, 20 Apr 2020 17:36:07 +0000 with message-id <[email protected]> and subject line Bug#955656: fixed in python-cobra 0.18.0-1 has caused the Debian Bug report #955656, regarding python-cobra: FTBFS: E ModuleNotFoundError: No module named 'matplotlib' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 955656: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955656 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: python-cobra Version: 0.14.2-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200402 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules build > dh build --with python3 --buildsystem=pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > dh_auto_configure -O--buildsystem=pybuild > I: pybuild base:217: python3.7 setup.py config > running config > I: pybuild base:217: python3.8 setup.py config > running config > dh_auto_build -O--buildsystem=pybuild > I: pybuild base:217: /usr/bin/python3.7 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra > copying cobra/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra > copying cobra/exceptions.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/array.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/solver.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/context.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/configuration.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/object.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/species.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/singleton.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/gene.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/dictlist.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/metabolite.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/model.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/formula.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/solution.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/geometric.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/room.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/loopless.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/deletion.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/gapfilling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/phenotype_phase_plane.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/variability.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/sampling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/parsimonious.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/summary.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/moma.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/test_manipulation.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/test_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/validate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/modify.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/delete.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/annotate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/annotations.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/boundary_types.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/minimal_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/dict.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_pickle.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_io_order.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/invalid0.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_cobra.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/update_pickles.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/raven.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.genes -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook_pfba_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/raven.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/invalid2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/invalid1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.media -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook_solution.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.yml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.bz2 -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > I: pybuild base:217: /usr/bin/python3 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra > copying cobra/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra > copying cobra/exceptions.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/array.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/solver.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/context.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/configuration.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/object.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/species.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/singleton.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/gene.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/dictlist.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/metabolite.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/model.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/formula.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/solution.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/geometric.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/room.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/loopless.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/deletion.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/gapfilling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/phenotype_phase_plane.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/variability.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/sampling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/parsimonious.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/summary.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/moma.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/test_manipulation.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/test_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/validate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/modify.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/delete.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/annotate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/annotations.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/boundary_types.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/minimal_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/dict.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_pickle.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_io_order.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/invalid0.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_cobra.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/update_pickles.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/raven.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.genes -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook_pfba_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/raven.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/invalid2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/invalid1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.media -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook_solution.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.yml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.bz2 -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > dh_auto_test -O--buildsystem=pybuild > I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; > python3.7 -m pytest > ============================= test session starts > ============================== > platform linux -- Python 3.7.7, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 > benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False > min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 > warmup=False warmup_iterations=100000) > rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg > plugins: benchmark-3.2.2 > collected 0 items / 1 errors > > ==================================== ERRORS > ==================================== > ________________________ ERROR collecting test session > _________________________ > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:440: in > _importconftest > return self._conftestpath2mod[conftestpath] > E KeyError: > local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py') > > During handling of the above exception, another exception occurred: > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:446: in > _importconftest > mod = conftestpath.pyimport() > /usr/lib/python3/dist-packages/py/_path/local.py:701: in pyimport > __import__(modname) > cobra/__init__.py:11: in <module> > from cobra.core import ( > cobra/core/__init__.py:5: in <module> > from cobra.core.configuration import Configuration > cobra/core/configuration.py:16: in <module> > from cobra.util.solver import interface_to_str, solvers > cobra/util/__init__.py:5: in <module> > from cobra.util.array import * > cobra/util/array.py:8: in <module> > import pandas as pd > /usr/lib/python3/dist-packages/pandas/__init__.py:182: in <module> > import pandas.testing > /usr/lib/python3/dist-packages/pandas/testing.py:7: in <module> > from pandas.util.testing import ( > /usr/lib/python3/dist-packages/pandas/util/testing.py:18: in <module> > from matplotlib.cbook import MatplotlibDeprecationWarning > E ModuleNotFoundError: No module named 'matplotlib' > > During handling of the above exception, another exception occurred: > /usr/lib/python3/dist-packages/py/_path/common.py:383: in visit > for x in Visitor(fil, rec, ignore, bf, sort).gen(self): > /usr/lib/python3/dist-packages/py/_path/common.py:435: in gen > for p in self.gen(subdir): > /usr/lib/python3/dist-packages/py/_path/common.py:424: in gen > dirs = self.optsort([p for p in entries > /usr/lib/python3/dist-packages/py/_path/common.py:425: in <listcomp> > if p.check(dir=1) and (rec is None or rec(p))]) > /usr/lib/python3/dist-packages/_pytest/main.py:667: in _recurse > ihook = self.gethookproxy(dirpath) > /usr/lib/python3/dist-packages/_pytest/main.py:482: in gethookproxy > my_conftestmodules = pm._getconftestmodules(fspath) > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:424: in > _getconftestmodules > mod = self._importconftest(conftestpath.realpath()) > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:463: in > _importconftest > raise ConftestImportFailure(conftestpath, sys.exc_info()) > E _pytest.config.ConftestImportFailure: > (local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py'), > (<class 'ModuleNotFoundError'>, ModuleNotFoundError("No module named > 'matplotlib'"), <traceback object at 0x7f5afd189140>)) > !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection > !!!!!!!!!!!!!!!!!!!! > =========================== 1 error in 0.70 seconds > ============================ > E: pybuild pybuild:352: test: plugin distutils failed with: exit code=2: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest > dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 > 3.8" returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2020/04/02/python-cobra_0.14.2-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---Source: python-cobra Source-Version: 0.18.0-1 Done: Andreas Tille <[email protected]> We believe that the bug you reported is fixed in the latest version of python-cobra, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated python-cobra package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 20 Apr 2020 19:11:22 +0200 Source: python-cobra Architecture: source Version: 0.18.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Closes: 955656 Changes: python-cobra (0.18.0-1) unstable; urgency=medium . * Team upload. * Drop outdated TODO * debhelper-compat 12 * Standards-Version: 4.5.0 (routine-update) * python3-sbml is now python2-sbml5 * d/control: - Build-Depends: python3-matplotlib Closes: #955656 - Use nocheck * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * debian/tests/control: s/ADTTMP/AUTOPKGTEST_TMP/ Checksums-Sha1: 0b856c983cd819d22f21725ed89338c9e845c351 2693 python-cobra_0.18.0-1.dsc 32005540d9fa32ae36c57e68ec3797162e3a6bf0 2560402 python-cobra_0.18.0.orig.tar.gz 8d13b9ce3026114a282f771500526cbfc4341f6b 7572 python-cobra_0.18.0-1.debian.tar.xz 7c53e3942d052a76c687eed3c6bed2295f577f21 9273 python-cobra_0.18.0-1_amd64.buildinfo Checksums-Sha256: 4e4454f0f8f33d5f6dd283a3a016921055bfafe372903fd4675b4619e4a02a1c 2693 python-cobra_0.18.0-1.dsc fe900b42641eb9718d5173232a6a4f3e09279265092d80b08f27c106325a9fb2 2560402 python-cobra_0.18.0.orig.tar.gz fa851803722de305047c26cce67f9bc978142873ed493b068f70bda263072aea 7572 python-cobra_0.18.0-1.debian.tar.xz 07f27e5b2ab9b5e0fb919cc517edbef7bc171d96bbbcf94fe75f8b88f04e9e21 9273 python-cobra_0.18.0-1_amd64.buildinfo Files: 8ba18c1c52e0bd788392be115e1fecde 2693 python optional python-cobra_0.18.0-1.dsc 71e5c6aeb51ede94143b4b5430441885 2560402 python optional python-cobra_0.18.0.orig.tar.gz 147e8232bb3b5f76abf805738e5a6a0f 7572 python optional python-cobra_0.18.0-1.debian.tar.xz 1ae924758d7850af5f7e1101c187f74a 9273 python optional python-cobra_0.18.0-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6d2I0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHgTA//d3HzIyuVxkb9lGb9I+AG8dpIg55mEo40 Xh4d+wXLcX3s8YvuniFj/Cz+axXvfmg/qzWtfWjTlzDtTJqRr4GI1dMfKZmm3PdL LsajqTR9FzCE2oQ27rkn4t4FVfWRUL82dRHzBfSuA2TFMmM9VLSwMmVvrFCetLwH swULqn1HSRc8RA7ulUeo1K1Am2Ejk/dhCPwDLkm8mBJ7cSnzm+ITGvhugRMwC/OV gxTOQ8gx0lJQbF5JJGlLgNrh2aXl9BQUUOGEopBW6iZEYQ6LhjkhG+NF11LB67xb 0eLJAbQgOvDEWfdhlffJNsuERJooKpd8HrgSxOZCX7znY4mqtNQXwZQmNYb3DE5K kF8o+1uzckFB+W751au6X5HsRFC2oZJHqJLN/GBNNiOOK9hU12QX/UjTs4CKkrsN a+5MjHA6ky1RR4OoaMyM+sDwiKHI1V8AOI/FXE8Nb3Zo34GAvWhaDzlRIQUOr0vQ yCuS0X3PYY/bGnqescmjrwZfMUPkqmoIT2YtwVOZSHU6x34p0rkrngvOWNV6HXtI hb65CGJY6uDoCP1dC6J3wTO3aUS7V9DNdcbCkSNyOZVGbr36lR5wlm0qbeRLJssS hVY2GA7pmZDkSBZ8AHcxM65/ifgzZ8iY9W+PUvza4hLHDUKVIByc8rbDmWR17YoC cyhJJITUvbY= =0p9Z -----END PGP SIGNATURE-----
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