Your message dated Wed, 27 May 2020 10:00:10 +0000
with message-id <e1jdsr4-000hbu...@fasolo.debian.org>
and subject line Bug#959409: fixed in pbcopper 1.6.0+dfsg-2
has caused the Debian Bug report #959409,
regarding pbcopper breaks pbbam (autopkgtest): libpbcopper.so.1.3.0: cannot
open shared object file: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
959409: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=959409
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pbcopper, pbbam
Control: found -1 pbcopper/1.4.0+dfsg-1
Control: found -1 pbbam/1.0.6+dfsg-2
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of pbcopper the autopkgtest of pbbam fails in
testing when that autopkgtest is run with the binary packages of
pbcopper from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
pbcopper from testing 1.4.0+dfsg-1
pbbam from testing 1.0.6+dfsg-2
all others from testing from testing
I copied some of the output at the bottom of this report. To be honest,
this looks a bit messy. 1) libpbcopper.so.1.4.0 is shipped by a package
called libpbcopper1.3.0 (this may be correct, but very confusing; didn't
investigate further). 2) pbmerge is opening libpbcopper.so.1.3.0 instead
of something like libpbcopper.so.1 (and following symlinks). This may be
correct (again, I didn't investigate), but it makes updates to pbcopper
very fragile (as in this case) and isn't what normally happens with
libraries, where the symlinks make it possible to update the package
without rebuilding if SONAME compatibility is maintained, and otherwise
trigger a transition that can be handled by the release team.
Currently this regression is blocking the migration of pbcopper to
testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=pbcopper
https://ci.debian.net/data/autopkgtest/testing/amd64/p/pbbam/5248083/log.gz
$ $PBMERGE $HQREGION_BAM $SCRAPS_BAM > $MERGED_BAM
+ pbmerge: error while loading shared libraries: libpbcopper.so.1.3.0:
cannot open shared object file: No such file or directory
+ [127]
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: pbcopper
Source-Version: 1.6.0+dfsg-2
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pbcopper, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 959...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated pbcopper package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 26 May 2020 13:28:10 +0200
Source: pbcopper
Binary: libpbcopper-dev libpbcopper1.6.0 libpbcopper1.6.0-dbgsym
Architecture: source amd64
Version: 1.6.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libpbcopper-dev - data structures, algorithms, and utilities for C++
applications -
libpbcopper1.6.0 - data structures, algorithms, and utilities for C++
applications
Closes: 959409 960219 961581
Changes:
pbcopper (1.6.0+dfsg-2) unstable; urgency=medium
.
* Use d-shlibs to make sure SOVERSION is correct
Closes: #959409
* d-shlibs requires explicitly Section: libs
* Restrict architectures to 64bit
Closes: #960219
* Fix simde build for ppc64el (thanks to Michael Hudson-Doyle for the patch)
Closes: #961581
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pbcopper_1.6.0+dfsg-2.debian.tar.xz
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libpbcopper-dev_1.6.0+dfsg-2_amd64.deb
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libpbcopper1.6.0_1.6.0+dfsg-2_amd64.deb
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libpbcopper-dev_1.6.0+dfsg-2_amd64.deb
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Files:
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pbcopper_1.6.0+dfsg-2.dsc
cc636c8a9e9e17e0b807f99952a6234a 5800 science optional
pbcopper_1.6.0+dfsg-2.debian.tar.xz
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libpbcopper-dev_1.6.0+dfsg-2_amd64.deb
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libpbcopper1.6.0-dbgsym_1.6.0+dfsg-2_amd64.deb
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libpbcopper1.6.0_1.6.0+dfsg-2_amd64.deb
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pbcopper_1.6.0+dfsg-2_amd64.buildinfo
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