Your message dated Thu, 09 Jul 2020 15:34:36 +0000
with message-id <e1jtyzi-00052w...@fasolo.debian.org>
and subject line Bug#963299: fixed in sniffles 1.0.11+ds-2
has caused the Debian Bug report #963299,
regarding sniffles: FTBFS: BamParser.h:11:10: fatal error:
api/BamMultiReader.h: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
963299: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963299
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: sniffles
Version: 1.0.11+ds-1
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++
> -I/usr/include/bamtools: -I/<<PKGBUILDDIR>>/src/../lib/bamtools-2.3.0/src
> -I/<<PKGBUILDDIR>>/src/../lib/tclap-1.2.1/include -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o
> CMakeFiles/sniffles.dir/Alignment.cpp.o -c /<<PKGBUILDDIR>>/src/Alignment.cpp
> In file included from /<<PKGBUILDDIR>>/src/BamParser.cpp:8:
> /<<PKGBUILDDIR>>/src/BamParser.h:11:10: fatal error: api/BamMultiReader.h: No
> such file or directory
> 11 | #include "api/BamMultiReader.h"
> | ^~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.
> make[3]: *** [src/CMakeFiles/sniffles.dir/build.make:105:
> src/CMakeFiles/sniffles.dir/BamParser.cpp.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2020/06/20/sniffles_1.0.11+ds-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: sniffles
Source-Version: 1.0.11+ds-2
Done: Pranav Ballaney <ballaneypra...@gmail.com>
We believe that the bug you reported is fixed in the latest version of
sniffles, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 963...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pranav Ballaney <ballaneypra...@gmail.com> (supplier of updated sniffles
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 03 Jul 2020 06:02:36 +0530
Source: sniffles
Architecture: source
Version: 1.0.11+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Pranav Ballaney <ballaneypra...@gmail.com>
Closes: 963299
Changes:
sniffles (1.0.11+ds-2) unstable; urgency=medium
.
[ Afif Elghraoui ]
* Remove myself from Uploaders
.
[ Steffen Moeller ]
* d/u/metadata: yamllint
.
[ Steffen Möller ]
* Update metadata with ref to conda
* Update metadata / added ref to bio.tools
.
[ Pranav Ballaney ]
* Fix INCLUDE_PATHS. Closes: #963299.
* Add to Uploaders
* Install examples and docs
.
[ Andreas Tille ]
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit.
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