Your message dated Thu, 23 Jul 2020 10:35:38 +0000
with message-id <[email protected]>
and subject line Bug#957426: fixed in libbpp-raa 2.4.1-4
has caused the Debian Bug report #957426,
regarding libbpp-raa: ftbfs with GCC-10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
957426: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957426
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libbpp-raa
Version: 2.4.1-3
Severity: normal
Tags: sid bullseye
User: [email protected]
Usertags: ftbfs-gcc-10
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/libbpp-raa_2.4.1-3_unstable_gcc10.log
The last lines of the build log are at the end of this report.
To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html
[...]
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Raa/RaaSpeciesTree.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Raa/parser.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/Raa/RaaList.h
-- Installing:
/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-raa/bpp-raa-targets.cmake
-- Installing:
/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-raa/bpp-raa-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake
usr/lib/x86_64-linux-gnu \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu
install -d -m 755 debian/libbpp-raa4/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.a
debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so
debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4
debian/libbpp-raa4/usr/lib/x86_64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-raa.so.4.0.0
debian/libbpp-raa4/usr/lib/x86_64-linux-gnu
PKGDEV=libbpp-raa-dev
PKGSHL=libbpp-raa4
install -d -m 755 debian/libbpp-raa-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-raa-dev/usr/include
install -d -m 755 debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake
debian/libbpp-raa-dev/usr/lib/x86_64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs
dh_installchangelogs
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz
dh_strip
dh_makeshlibs
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see
diff output below
dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols
file: see diff output below
dpkg-gensymbols: warning: debian/libbpp-raa4/DEBIAN/symbols doesn't match
completely debian/libbpp-raa4.symbols.amd64
--- debian/libbpp-raa4.symbols.amd64 (libbpp-raa4_2.4.1-3_amd64)
+++ dpkg-gensymbolsjCEoU_ 2020-02-26 12:41:18.045407731 +0000
@@ -72,13 +72,15 @@
_ZN3bpp7RaaListC1Ev@Base 2.4.1
_ZN3bpp7RaaListC2Ev@Base 2.4.1
_ZNK3bpp17AlphabetException11getAlphabetEv@Base 2.4.1
+
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1-3
+
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1-3
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base
2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base
2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base
2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base
2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base
2.4.1
-
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base
2.4.1
+#MISSING: 2.4.1-3#
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base
2.4.1
_ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
_ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
_ZTv0_n72_N3bpp20AbstractCoreSequence11setCommentsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base
2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit
status 2
--- End Message ---
--- Begin Message ---
Source: libbpp-raa
Source-Version: 2.4.1-4
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbpp-raa, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libbpp-raa package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 23 Jul 2020 12:16:52 +0200
Source: libbpp-raa
Architecture: source
Version: 2.4.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 957426
Changes:
libbpp-raa (2.4.1-4) unstable; urgency=medium
.
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Refer to specific version of license GPL-2+.
* Remove obsolete fields Contact, Name from debian/upstream/metadata (already
present in machine-readable debian/copyright).
* Update symbols for gcc-10
Closes: #957426
Checksums-Sha1:
8034142ce3a0e9dead8519074eeffaf06d93f893 2152 libbpp-raa_2.4.1-4.dsc
012c9aff0665f482fd06673ec905a71bc18c6752 11608 libbpp-raa_2.4.1-4.debian.tar.xz
9f9ca74cb7a7a9198ee4ccc750ec9225a340dfb0 7383
libbpp-raa_2.4.1-4_amd64.buildinfo
Checksums-Sha256:
e9529271fc92c8dcd5fbc4f606a3c292cfd1e0e8bb69a8e0ada1516a245a9cbd 2152
libbpp-raa_2.4.1-4.dsc
7cfff33d636c3014fccd7ba19269d754aca7eddccce1c68ca6b91d4504215c99 11608
libbpp-raa_2.4.1-4.debian.tar.xz
dd61e06d8db2cb877f1cde4ea4333c6fd1da266353265f928b94faf5822b8bde 7383
libbpp-raa_2.4.1-4_amd64.buildinfo
Files:
d5e6c0eb57d023927c0c02cf40a07d9c 2152 science optional libbpp-raa_2.4.1-4.dsc
d2cd12753a619324b10d5fcb4dbe38c3 11608 science optional
libbpp-raa_2.4.1-4.debian.tar.xz
fa2c57cd286377d2e4d63589c96e1d9f 7383 science optional
libbpp-raa_2.4.1-4_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=wvKk
-----END PGP SIGNATURE-----
--- End Message ---
