Your message dated Wed, 30 Sep 2020 14:36:29 +0000
with message-id <[email protected]>
and subject line Bug#971115: fixed in r-bioc-dada2 1.16.0+dfsg-2
has caused the Debian Bug report #971115,
regarding r-bioc-dada2: FTBFS: ld: cannot find /usr/lib/x86_64-linux-gnu: file
format not recognized
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
971115: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=971115
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-bioc-dada2
Version: 1.16.0+dfsg-1
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200926 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o dada2.so
> RcppExports.o Rmain.o chimera.o cluster.o containers.o error.o evaluate.o
> filter.o kmers.o misc.o nwalign_endsfree.o nwalign_vectorized.o pval.o
> taxonomy.o /usr/lib/x86_64-linux-gnu -ltbb -ltbbmalloc -L/usr/lib/R/lib -lR
> /usr/bin/ld: cannot find /usr/lib/x86_64-linux-gnu: file format not recognized
> collect2: error: ld returned 1 exit status
The full build log is available from:
http://qa-logs.debian.net/2020/09/26/r-bioc-dada2_1.16.0+dfsg-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: r-bioc-dada2
Source-Version: 1.16.0+dfsg-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-dada2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated r-bioc-dada2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 30 Sep 2020 15:51:38 +0200
Source: r-bioc-dada2
Architecture: source
Version: 1.16.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 959656 971115
Changes:
r-bioc-dada2 (1.16.0+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Versioned Build-Depends: r-cran-rcppparallel (>= 5.0.2+dfsg-3)
Closes: #971115
* Architecture: any-amd64
Closes: #959656
* debhelper-compat 13 (routine-update)
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