Your message dated Thu, 19 Nov 2020 10:49:24 +0000
with message-id <[email protected]>
and subject line Bug#972553: fixed in r-cran-seurat 3.2.2-2
has caused the Debian Bug report #972553,
regarding r-cran-seurat: autopkgtest regression
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
972553: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972553
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-cran-seurat
Version: 3.1.5-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: regression
Hi Maintainer
Since 2020-09-25, r-cran-seurat's autopkgtests have been failing in
testing [1], due to r-cran-hdf5r and r-bioc-monocle not being
available there.
However, r-cran-seurat's tests currently also fail in unstable on
armhf [2], where r-cran-hdf5r
and r-bioc-monocle are both available.
I've copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-cran-seurat/testing/amd64/
[2] https://ci.debian.net/packages/r/r-cran-seurat/unstable/armhf/
> test_check("Seurat")
Registered S3 method overwritten by 'cli':
method from
print.boxx spatstat
── 1. Error: (unknown) (@test_load_10X.R#34) ──────────────────────────────────
HDF5-API ../../../src/H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. Seurat::Load10X_Spatial(data.dir = "../testdata/visium")
2. Seurat::Read10X_h5(...)
4. hdf5r:::`[.H5D`(...)
5. x$read(...)
6. self$read_low_level(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 429 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: (unknown) (@test_load_10X.R#34)
Error: testthat unit tests failed
Execution halted
--- End Message ---
--- Begin Message ---
Source: r-cran-seurat
Source-Version: 3.2.2-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-cran-seurat, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated r-cran-seurat package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 19 Nov 2020 11:13:22 +0100
Source: r-cran-seurat
Architecture: source
Version: 3.2.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 972553
Changes:
r-cran-seurat (3.2.2-2) unstable; urgency=medium
.
* Team upload.
* Exclude single test for armhf and i386
Closes: #972553
* Standards-Version: 4.5.1 (routine-update)
* No tab in license text (routine-update)
Checksums-Sha1:
084e3e0e4f65bef96e7b84d237b96d78ea5331b4 2798 r-cran-seurat_3.2.2-2.dsc
59141745f07a3513612d454ce1b0374f5a0332ee 4296
r-cran-seurat_3.2.2-2.debian.tar.xz
a4114fc1010b50e23521698215a943d77005bc2e 16010
r-cran-seurat_3.2.2-2_amd64.buildinfo
Checksums-Sha256:
53bfaba283aa5a3a4efc6561b5c8a7fe678c0c047a5f2a31e4d48567ee86a912 2798
r-cran-seurat_3.2.2-2.dsc
578e43bd18f597d2a5706a962f36ffd2f70ca8ad7e3994d3888bc6a4a9d9baa5 4296
r-cran-seurat_3.2.2-2.debian.tar.xz
0b614621da49157316ebbfbcc28fdda87a50d6119f510184dfd6abfa34174aca 16010
r-cran-seurat_3.2.2-2_amd64.buildinfo
Files:
61945ea51fb8d3fbe27560f407dab13c 2798 gnu-r optional r-cran-seurat_3.2.2-2.dsc
31e61eefb7b91becacd6cbc94f765ebc 4296 gnu-r optional
r-cran-seurat_3.2.2-2.debian.tar.xz
9849fcb30073a8a007c0e2fb24dd3860 16010 gnu-r optional
r-cran-seurat_3.2.2-2_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=IOt/
-----END PGP SIGNATURE-----
--- End Message ---
