Your message dated Sat, 05 Dec 2020 11:06:44 +0000 with message-id <e1klvom-0003b3...@fasolo.debian.org> and subject line Bug#974168: fixed in bioperl-run 1.7.3-5 has caused the Debian Bug report #974168, regarding bioperl-run: autopkgtest failure to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 974168: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=974168 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: bioperl-run Version: 1.7.3-4 Severity: serious https://ci.debian.net/packages/b/bioperl-run/ ... # Can't locate File/Sort.pm in @INC (you may need to install the File::Sort module) (@INC contains: ../../.. /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.30.3 /usr/local/share/perl/5.30.3 /usr/lib/x86_64-linux-gnu/perl5/5.30 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base /usr/lib/x86_64-linux-gnu/perl/5.30 /usr/share/perl/5.30 /usr/local/lib/site_perl) at /usr/share/perl5/Bio/Tools/Run/BEDTools.pm line 197. # BEGIN failed--compilation aborted at /usr/share/perl5/Bio/Tools/Run/BEDTools.pm line 197. not ok 31 - /usr/bin/perl -wc /usr/share/perl5/Bio/Tools/Run/BEDTools.pm exited successfully ... libfile-sort-perl is now in unstable, but after adding it to dependencies and build dependencies the package build fails with other test failures.
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--- Begin Message ---Source: bioperl-run Source-Version: 1.7.3-5 Done: =?utf-8?q?=C3=89tienne_Mollier?= <etienne.moll...@mailoo.org> We believe that the bug you reported is fixed in the latest version of bioperl-run, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 974...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <etienne.moll...@mailoo.org> (supplier of updated bioperl-run package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 03 Dec 2020 21:57:37 +0100 Source: bioperl-run Architecture: source Version: 1.7.3-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <etienne.moll...@mailoo.org> Closes: 974168 Changes: bioperl-run (1.7.3-5) unstable; urgency=medium . * Team upload. . [ Michael R. Crusoe ] * Add build-dep on libfile-sort-perl as that has arrived in Debian * debian/upstream/metadata: Add Repository & Repository-Browse . [ Pranav Ballaney ] * Disable tests for RemoteBlast * Disable tests for RemoteBlast_rpsblast * Extract BEDTools version properly . [ Andreas Tille ] * Depends: libfile-sort-perl Closes: #974168 * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/control (routine-update) . [ Étienne Mollier ] * Add get-overlap.patch to map to the proper "getOverlap" wrapper. * Add build time test dependencies to get BEDtools test data sets. * Add alternate-data.patch to use a dataset available in the Debian archive during build time testings. * Suppress retries when attempting to access remote Blast resources, this prevents hogging autopkgtest runners ten more minutes. Checksums-Sha1: 8a3f3c1e60f82b01301fbb43bcb512e5b89acb63 2803 bioperl-run_1.7.3-5.dsc dae94a03189afa851315648e86cbdcda127bfbf1 17304 bioperl-run_1.7.3-5.debian.tar.xz 84e5a4bbd34cff76ed4fd2b529bd658ea0a47c13 17204 bioperl-run_1.7.3-5_source.buildinfo Checksums-Sha256: a055f7f6ac4067c12b654a0350300704e6681e3fc73697fcfd2b053da84dc1aa 2803 bioperl-run_1.7.3-5.dsc 990389a4782d17a89c9c2a1a6376964c3e4af848370977455400b43ba1a0672b 17304 bioperl-run_1.7.3-5.debian.tar.xz 4e8cc1549786160f669e690b2b77d7747cfe4375a085b1e8ba94b89aff3327b7 17204 bioperl-run_1.7.3-5_source.buildinfo Files: 03328a322db0b99373a6a5b6f2ae0bb5 2803 science optional bioperl-run_1.7.3-5.dsc e0dc4c80e797e41fe166b0ebc9e122f2 17304 science optional bioperl-run_1.7.3-5.debian.tar.xz 56f59e8ab05556c002691b399ef608df 17204 science optional bioperl-run_1.7.3-5_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/LWRIOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHlTRAAh+Uqt3mitihV3UYIkfTwHRIpIu38E0HYfiER orMoYq9sfO2yrqtjrRcDrs0KHQKJ261WdHVLhtcM+IY6+1VBYB3Xbj/Dfj/+bKNw AK2yDfZn+T2mqp1/k2912z7od+gYI3HsMh2el2AMj1wOwgZBdDM1jTL5NTyn+rrF nfg5IdMwBKvklN85kGzY/S0zwYzAmXosjcBx0rxDnXfLO14TDZbGWKqeVuAdVIru 4JyN8zfiiZISc/fMYYpfhF9A7gDgHruj/BqRzYbXovJWyy1Dp+4BRGvYG/rp5wBZ ELf1Lo+mBlLn6IDjrghWV5YjzwCsz/JaXH6uBO9s7VXIpiQClaVZDeB0g/rpq5xz 6mL1YlZBKL/Y2l07Gjs8nIAGYb/ElL91wvNZUfFIcoz+EUlIG7cixiuSJKjADasQ RJ88JB18fj2vX+u+o5cZRRad/MIKxnv7TypVlD7oOYKWBfGOScKPy0NooUHeyz8t Y4JjSTf2WDMy3hKcxDSdZdYeQDkdHgWPFM20y/y5zBFDE+AdjKzLoSfNbmN5zKh+ GZNexoDxGTuesRPcj+5Avk16MawR36QeraBGSc6xB07alPpZWMIUAIlarUbQSY5X RU7MtWqJtX8xHw5mjdBbOztwQL4DnY+zunUekTsU6pQAuO7fbDpZpV5zBYkFXXyS B51lLbU= =7NSw -----END PGP SIGNATURE-----
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