Your message dated Sun, 06 Dec 2020 16:23:07 +0000 with message-id <[email protected]> and subject line Bug#976567: fixed in libhmsbeagle 3.1.2+dfsg-9 has caused the Debian Bug report #976567, regarding libhmsbeagle: FTBFS: GPUInterface.h:221:27: error: there are no arguments to ‘malloc’ that depend on a template parameter, so a declaration of ‘malloc’ must be available [-fpermissive] to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 976567: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=976567 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: libhmsbeagle Version: 3.1.2+dfsg-8 Severity: serious Justification: FTBFS on arm64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201205 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on arm64 (I don't know if it also fails on amd64). Relevant part (hopefully): > /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. > -I../../libhmsbeagle -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -Wdate-time > -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-arm64/include > -I/usr/lib/jvm/java-11-openjdk-arm64/include/linux -O3 -std=c++11 -D > FW_OPENCL -I/usr/include/CL/include -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -c -o libhmsbeagle_opencl_la-OpenCLPlugin.lo `test -f > 'OpenCLPlugin.cpp' || echo './'`OpenCLPlugin.cpp > libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle > -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -Wdate-time -D_FORTIFY_SOURCE=2 > -I/usr/lib/jvm/java-11-openjdk-arm64/include > -I/usr/lib/jvm/java-11-openjdk-arm64/include/linux -O3 -std=c++11 -D > FW_OPENCL -I/usr/include/CL/include -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -c OpenCLPlugin.cpp -fPIC -DPIC -o > .libs/libhmsbeagle_opencl_la-OpenCLPlugin.o > In file included from /usr/include/CL/cl.h:20, > from /usr/include/CL/opencl.h:24, > from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:60, > from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/BeagleGPUImpl.h:39, > from OpenCLPlugin.cpp:8: > /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: > CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’ > 22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not > defined. Defaulting to 300 (OpenCL 3.0)") > | > ^ > In file included from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/BeagleGPUImpl.h:39, > from OpenCLPlugin.cpp:8: > /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h: In member function ‘void > opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, int, double, int*, > Real)’: > /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:221:27: error: there are no > arguments to ‘malloc’ that depend on a template parameter, so a declaration > of ‘malloc’ must be available [-fpermissive] > 221 | Real* hPtr = (Real*) malloc(sizeof(Real) * length); > | ^~~~~~ > /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:221:27: note: (if you use > ‘-fpermissive’, G++ will accept your code, but allowing the use of an > undeclared name is deprecated) > make[6]: *** [Makefile:701: libhmsbeagle_opencl_la-OpenCLPlugin.lo] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/12/05/libhmsbeagle_3.1.2+dfsg-8_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with me so that we can identify if something relevant changed in the meantime. About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---Source: libhmsbeagle Source-Version: 3.1.2+dfsg-9 Done: Andreas Tille <[email protected]> We believe that the bug you reported is fixed in the latest version of libhmsbeagle, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libhmsbeagle package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 06 Dec 2020 16:53:18 +0100 Source: libhmsbeagle Architecture: source Version: 3.1.2+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Closes: 976567 Changes: libhmsbeagle (3.1.2+dfsg-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Repository, Repository-Browse. * Install all *.a files and remove *.la files from debian/tmp * Add missing stdlib.h Closes: #976567 Checksums-Sha1: 499185a4ea140d044ae64b3885db1add0f1c85b3 2388 libhmsbeagle_3.1.2+dfsg-9.dsc 9edfc0ad4c7ae38f876b6a5e33885d6d7eb3a430 37072 libhmsbeagle_3.1.2+dfsg-9.debian.tar.xz fde15c520256c376a44782eeba47f92fe1601278 13163 libhmsbeagle_3.1.2+dfsg-9_amd64.buildinfo Checksums-Sha256: e89e8c936fc7baa2aa1ea7a2fef0796b192593b831d64752d4665fe922fee197 2388 libhmsbeagle_3.1.2+dfsg-9.dsc 80a93fd9b33ee58dfbec787cd1651705329815f718b354317141ceab4c7ef00d 37072 libhmsbeagle_3.1.2+dfsg-9.debian.tar.xz 05c1be17e0d67f45aab2d4676818b78de7699142f2cb28a5bd2da4df8a2ce9f5 13163 libhmsbeagle_3.1.2+dfsg-9_amd64.buildinfo Files: bec97c0b33794a2e2558e33ccd650da4 2388 libs optional libhmsbeagle_3.1.2+dfsg-9.dsc 55e743d9033d01e9802499bed362af7b 37072 libs optional libhmsbeagle_3.1.2+dfsg-9.debian.tar.xz d4d8c62c22939c87ebd2a3ff99e65454 13163 libs optional libhmsbeagle_3.1.2+dfsg-9_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/NAD4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLsg//Z3gczniA/HXkS8lDDXqdjPgQLxveBVuL 240LY/Et0r4g0KjHOk7KKTVM391+31eGucZ+uQVIBIrDnhS97VuEEzAA6Tr/Yo7Z C5VG7Na0JHLZc4/8F6yiO+I6LOs3L3gD+Plh4EEw/Bnq4dtZnPhtfdhSs8TqKbV0 E+CBOX9UfNAOl0f+Y9wLwE7t9gziI4ZA1L0MbJtffI0knS6whLuSQwTZ4mQnubs6 i0eHU0ps4/8Xp0p2SxRGtVRfSd6Vzg6SDxLnUb2ag2P30EogK3kS83DbHmZpc+tq edbNWm0/KVEL4b+xsvRwCTEeIvjPMNRZhJn22vPqwtF4pzH/clTfQ4ODE/uYOMDT p/qVSIeFVqNTvbP7/J1NKfE+Q7ei8xPD/dYoTSXhYfejAthsPXd8UeOKzgtkBij8 YNv+vH3Fjl846N9w4ff2SLpW9jxQyRQmHDIGquxxyMh4/EgNB64qUJmis/t/xHp2 Ny+2HsfkfcrZQIMXJkb05T1RSnBRPmqNCZ2r2/lim9t1dDnw79oC3wHYrjsGOJtl Jp0S7TtiBIw8SwhpoAwFw7TsK1bYpcsU8dfhUXBQ7vpv1WQs0VUAFssbKTZTdc1d I5RdfDakEa6YmXrQDJg37hJG+Y9+jdZ3jfcRVTZ7+lNSLl1jSFvFN0QTwCUdtO2s czKDQjykWmE= =Gh9g -----END PGP SIGNATURE-----
--- End Message ---
