Your message dated Mon, 18 Jan 2021 06:04:45 +0000
with message-id <[email protected]>
and subject line Bug#980050: fixed in mdtraj 1.9.5-1
has caused the Debian Bug report #980050,
regarding mdtraj: FTBFS with jupyter-client 6.1.11
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
980050: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=980050
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mdtraj
Severity: normal
Tags: ftbfs
Dear Maintainer,
mdtraj appears to FTBFS when trying to migrate jupyter-client 6.1.6 ->
6.1.11
The failure is trying to build the example notebook examples/nmr.ipynb;
it appears to fail trying to find an external dependency (sparta) which
as far as I can tell was never installed for autopkgtests. I'm not quite
sure why this regression is visible at this point, since I can't see why
this test would have succeeded before. Presumably a change in jupyter
client affected the custom notebook executor in the testsuite.
see https://ci.debian.net/data/autopkgtest/testing/amd64/m/mdtraj/9644331/log.gz
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 5.10.0-1-amd64 (SMP w/1 CPU thread)
Kernel taint flags: TAINT_WARN
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), LANGUAGE=en_GB
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: mdtraj
Source-Version: 1.9.5-1
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
mdtraj, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated mdtraj package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 18 Jan 2021 16:30:54 +1100
Source: mdtraj
Architecture: source
Version: 1.9.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 980050
Changes:
mdtraj (1.9.5-1) unstable; urgency=medium
.
* New upstream release.
* Standards-Version: 4.5.1
* debian/tests: skip nmr.ipynb, it requires SPARTA+ which is not
available. Closes: #980050.
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