Your message dated Wed, 10 Feb 2021 08:21:10 +0000
with message-id <[email protected]>
and subject line Bug#982421: fixed in r-cran-seurat 4.0.0-2
has caused the Debian Bug report #982421,
regarding r-cran-seurat: autopkgtest failure on i386/armhf
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
982421: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982421
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-cran-seurat
Version: 4.0.0-1
Severity: serious
Tags: patch
https://ci.debian.net/data/autopkgtest/testing/i386/r/r-cran-seurat/10310072/log.gz
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_load_10X.R:37:3): 10x Spatial Data Parsing ──────────────────────
Error: object 'txsp' not found
Backtrace:
█
1. └─testthat::expect_is(txsp, "Seurat") test_load_10X.R:37:2
2. └─testthat::quasi_label(enquo(object), label, arg = "object")
3. └─rlang::eval_bare(expr, quo_get_env(quo))
[ FAIL 1 | WARN 0 | SKIP 16 | PASS 563 ]
Error: Test failures
Execution halted
autopkgtest [18:31:32]: test run-unit-test: -----------------------]
autopkgtest [18:31:32]: test run-unit-test: - - - - - - - - - - results - - -
- - - - - - -
run-unit-test FAIL non-zero exit status 1
The following workaround seems to work:
--- debian/tests/run-unit-test.old 2021-02-09 23:36:49.823404797 +0000
+++ debian/tests/run-unit-test 2021-02-09 23:37:01.551392396 +0000
@@ -18,9 +18,7 @@
# Ignore single test on armhf and i386 (see bug #972553)
if [ "$hostarch" = "armhf" -o "$hostarch" = "i386" ] ; then
- set -x
- sed -i '34s/^/#/' testthat/test_load_10X.R
- set +x
+ rm -f testthat/test_load_10X.R
fi
for testfile in *.R; do
echo "BEGIN TEST $testfile"
--- End Message ---
--- Begin Message ---
Source: r-cran-seurat
Source-Version: 4.0.0-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-cran-seurat, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated r-cran-seurat package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 10 Feb 2021 08:19:01 +0100
Source: r-cran-seurat
Architecture: source
Version: 4.0.0-2
Distribution: unstable
Urgency: high
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 982421
Changes:
r-cran-seurat (4.0.0-2) unstable; urgency=high
.
* Team upload.
* Make sure excluded test on armhf and i386 will be really ignored
Closes: #982421
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