close #982622 On Wed, Feb 17, 2021 at 7:09 AM Debian Bug Tracking System < ow...@bugs.debian.org> wrote:
> Your message dated Wed, 17 Feb 2021 07:04:35 +0000 > with message-id <e1lcgt1-00076r...@fasolo.debian.org> > and subject line Bug#982622: fixed in r-cran-matrixstats 0.58.0-2 > has caused the Debian Bug report #982622, > regarding r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<< > 1.2.1) > to be marked as done. > > This means that you claim that the problem has been dealt with. > If this is not the case it is now your responsibility to reopen the > Bug report if necessary, and/or fix the problem forthwith. > > (NB: If you are a system administrator and have no idea what this > message is talking about, this may indicate a serious mail system > misconfiguration somewhere. Please contact ow...@bugs.debian.org > immediately.) > > > -- > 982622: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982622 > Debian Bug Tracking System > Contact ow...@bugs.debian.org with problems > > > > ---------- Forwarded message ---------- > From: Adrian Bunk <b...@debian.org> > To: Debian Bug Tracking System <sub...@bugs.debian.org> > Cc: > Bcc: > Date: Fri, 12 Feb 2021 17:21:54 +0200 > Subject: r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<< > 1.2.1) > Package: r-cran-matrixstats > Version: 0.58.0-1 > Severity: serious > > > https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-matrixgenerics/10405220/log.gz > > ... > > test_check("MatrixGenerics") > ══ Failed tests > ════════════════════════════════════════════════════════════════ > ── Failure (test-api_compatibility.R:89:2): colAvgsPerRowSet works > ──────────── > `matrixStats_formals` not identical to > `MatrixGenerics_default_method_formals`. > Names: 1 string mismatch > Length mismatch: comparison on first 7 components > Component 7: 'is.NA' value mismatch: 0 in current 1 in target > ── Error (test-api_compatibility.R:360:2): colMads works > ────────────────────── > Error: Argument 'center' should be of the same length as number of columns > of 'x': 6 != 8 > Backtrace: > █ > 1. ├─MatrixGenerics::colMads(...) test-api_compatibility.R:360:8 > 2. └─MatrixGenerics::colMads(...) > 3. └─MatrixGenerics:::.local(...) > 4. └─matrixStats::colMads(...) > ── Error (test-api_compatibility.R:593:2): colSds works > ─────────────────────── > Error: Argument 'center' should be of the same length as number of columns > of 'x': 6 != 8 > Backtrace: > █ > 1. ├─MatrixGenerics::colSds(...) test-api_compatibility.R:593:8 > 2. └─MatrixGenerics::colSds(...) > 3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...) > 4. └─matrixStats::colSds(...) > 5. └─matrixStats::colVars(...) > ── Error (test-api_compatibility.R:678:2): colVars works > ────────────────────── > Error: Argument 'center' should be of the same length as number of columns > of 'x': 6 != 8 > Backtrace: > █ > 1. ├─MatrixGenerics::colVars(...) test-api_compatibility.R:678:8 > 2. └─MatrixGenerics::colVars(...) > 3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...) > 4. └─matrixStats::colVars(...) > ── Error (test-api_compatibility.R:698:2): colWeightedMads works > ────────────── > Error: Argument 'center' should be of the same length as number of columns > of 'x': 1 != 6 > Backtrace: > █ > 1. ├─MatrixGenerics::colWeightedMads(...) test-api_compatibility.R:698:8 > 2. └─MatrixGenerics::colWeightedMads(...) > 3. └─matrixStats::colWeightedMads(...) > ── Failure (test-api_compatibility.R:856:2): rowAvgsPerColSet works > ─────────── > `matrixStats_formals` not identical to > `MatrixGenerics_default_method_formals`. > Names: 1 string mismatch > Length mismatch: comparison on first 7 components > Component 7: 'is.NA' value mismatch: 0 in current 1 in target > ── Error (test-api_compatibility.R:1127:2): rowMads works > ───────────────────── > Error: Argument 'center' should be of the same length as number of rows of > 'x': 16 != 12 > Backtrace: > █ > 1. ├─MatrixGenerics::rowMads(...) test-api_compatibility.R:1127:8 > 2. └─MatrixGenerics::rowMads(...) > 3. └─MatrixGenerics:::.local(...) > 4. └─matrixStats::rowMads(...) > ── Error (test-api_compatibility.R:1360:2): rowSds works > ────────────────────── > Error: Argument 'center' should be of the same length as number of rows of > 'x': 16 != 12 > Backtrace: > █ > 1. ├─MatrixGenerics::rowSds(...) test-api_compatibility.R:1360:8 > 2. └─MatrixGenerics::rowSds(...) > 3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...) > 4. └─matrixStats::rowSds(...) > 5. └─matrixStats::rowVars(...) > ── Error (test-api_compatibility.R:1445:2): rowVars works > ───────────────────── > Error: Argument 'center' should be of the same length as number of rows of > 'x': 16 != 12 > Backtrace: > █ > 1. ├─MatrixGenerics::rowVars(...) test-api_compatibility.R:1445:8 > 2. └─MatrixGenerics::rowVars(...) > 3. └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...) > 4. └─matrixStats::rowVars(...) > ── Error (test-api_compatibility.R:1466:2): rowWeightedMads works > ───────────── > Error: Argument 'center' should be of the same length as number of rows of > 'x': 1 != 6 > Backtrace: > █ > 1. ├─MatrixGenerics::rowWeightedMads(...) test-api_compatibility.R:1466:8 > 2. └─MatrixGenerics::rowWeightedMads(...) > 3. └─matrixStats::rowWeightedMads(...) > > [ FAIL 10 | WARN 0 | SKIP 0 | PASS 300 ] > Error: Test failures > Execution halted > autopkgtest [18:11:11]: test pkg-r-autopkgtest: -----------------------] > autopkgtest [18:11:11]: test pkg-r-autopkgtest: - - - - - - - - - - > results - - - - - - - - - - > pkg-r-autopkgtest FAIL non-zero exit status 1 > autopkgtest [18:11:11]: @@@@@@@@@@@@@@@@@@@@ summary > run-unit-test FAIL non-zero exit status 1 > pkg-r-autopkgtest FAIL non-zero exit status 1 > > > > ---------- Forwarded message ---------- > From: Debian FTP Masters <ftpmas...@ftp-master.debian.org> > To: 982622-cl...@bugs.debian.org > Cc: > Bcc: > Date: Wed, 17 Feb 2021 07:04:35 +0000 > Subject: Bug#982622: fixed in r-cran-matrixstats 0.58.0-2 > Source: r-cran-matrixstats > Source-Version: 0.58.0-2 > Done: Andreas Tille <ti...@debian.org> > > We believe that the bug you reported is fixed in the latest version of > r-cran-matrixstats, which is due to be installed in the Debian FTP archive. > > A summary of the changes between this version and the previous one is > attached. > > Thank you for reporting the bug, which will now be closed. If you > have further comments please address them to 982...@bugs.debian.org, > and the maintainer will reopen the bug report if appropriate. > > Debian distribution maintenance software > pp. > Andreas Tille <ti...@debian.org> (supplier of updated r-cran-matrixstats > package) > > (This message was generated automatically at their request; if you > believe that there is a problem with it please contact the archive > administrators by mailing ftpmas...@ftp-master.debian.org) > > > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA512 > > Format: 1.8 > Date: Wed, 17 Feb 2021 07:36:50 +0100 > Source: r-cran-matrixstats > Architecture: source > Version: 0.58.0-2 > Distribution: unstable > Urgency: medium > Maintainer: Debian R Packages Maintainers < > r-pkg-t...@alioth-lists.debian.net> > Changed-By: Andreas Tille <ti...@debian.org> > Closes: 982622 > Changes: > r-cran-matrixstats (0.58.0-2) unstable; urgency=medium > . > * Breaks: r-bioc-matrixgenerics (<< 1.2.1) > Closes: #982622 > Checksums-Sha1: > 326fcc8f8347a76a18a2d48ac91f0bcc77d1ffc1 2154 > r-cran-matrixstats_0.58.0-2.dsc > 6fc5d8cea8ee715876058c17a2b1feb2ed046ea4 4280 > r-cran-matrixstats_0.58.0-2.debian.tar.xz > e6b47a7c429b31d36ad877a4998b368a7b5d9546 10535 > r-cran-matrixstats_0.58.0-2_amd64.buildinfo > Checksums-Sha256: > 9e2acc659db54dac2ca15b5cce1cb1a8eaff162d0d01e061e06b03f01506716f 2154 > r-cran-matrixstats_0.58.0-2.dsc > 129e87e5d25a9d90e303092e09e08a2ef6eea402f8eb3f5dea931f93c27cbb33 4280 > r-cran-matrixstats_0.58.0-2.debian.tar.xz > 46981ded03062ee20fb350f929f0dc57109ac4b33efab5142f0afaa5dab7a12a 10535 > r-cran-matrixstats_0.58.0-2_amd64.buildinfo > Files: > 8e1ab3937eeacc7e6d2366920bea181a 2154 gnu-r optional > r-cran-matrixstats_0.58.0-2.dsc > 6d346f3c2e53f99e074603a23ccad04f 4280 gnu-r optional > r-cran-matrixstats_0.58.0-2.debian.tar.xz > 43c248d374945e53fde85bf999529bfb 10535 gnu-r optional > r-cran-matrixstats_0.58.0-2_amd64.buildinfo > > -----BEGIN PGP SIGNATURE----- > > iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAsvAoRHHRpbGxlQGRl > Ymlhbi5vcmcACgkQV4oElNHGRtEe6BAAi6fllkoiXo5Ppip8FC8jnGMpWHWcGcxv > WIThI66LGWtf746l3kLSf5ZXEeQgrai+2u0/teGot2fCftp4D3KR9Y7Utde90kb6 > rwzwMgZ5ZND7xf+UrN3Ese+r9Lr6oa88AmdH7/crgi4S7idCqkBQ4KMFeNLzwDmp > yU5hy8R22zXpHkDPlyK/mBN6Gi4cQWYSs+3rlD0dIY8dLATFfej15aXhIvWKH8pL > +rU2aptKmLlLNnWZXandZkrpq7Gp5iokWA8rNRswMIaVMNE3W199UBt0/lwBgeSd > hNdmZfvjyV0n7QhaQMkJ5BCDcxf/TDCb+2oeX13mxYZ7K0cf93uapxclW3S88hAv > 4iZWcQZs+LXlYtg7Vc9G/j3/Or4eFJvZE5Fd29VErcGGcrmtVTtkziS+EdztjgmL > b2BEZYFcfWUwAxkQnLdJ52QrYhAhfWONKOswhG7HKnBEuOospbcMUt9BCQABzHDE > IThbBlkbDxsdmO1vQ4LX+p9dUUA5HgaUH+iO+z2Piswit5zAo9envPSP6CA8vJ46 > cSWDAwQtUTW6zy+PMpAZLd6eBMQfSa7K6ULpW/m3tjmIyduiQRQEBNyKA2R2fdCn > J+mhWXA5rm8YHK7uHxiskiXN5FcAKawZdSniB3VqfO9RBHhrj5zCCUwHqAWuDKwT > Rtt57pJ9Wsk= > =J/7H > -----END PGP SIGNATURE-----