Your message dated Wed, 10 Mar 2021 12:48:37 +0000
with message-id <[email protected]>
and subject line Bug#984854: fixed in seqsero 1.0.1+dfsg-3
has caused the Debian Bug report #984854,
regarding seqsero: Seqsero invokes python2.7 during execution
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
984854: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984854
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: seqsero
Version: 1.0.1+dfsg-2
Severity: serious
X-Debbugs-Cc: [email protected]
Dear Maintainer,
Seqsero seems to invoke python2.7 during execution, for example here[1]
Similar invocation statements have _not_ been patched out yet in the
d/patches/2to3.patch, probably affecting the functionality serverly.
[1]: https://sources.debian.org/src/seqsero/1.0.1+dfsg-2/SeqSero.py/#L35
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
Versions of packages seqsero depends on:
ii bwa 0.7.17-5
ii python3 3.9.1-1
ii python3-biopython 1.78+dfsg-3
ii samtools 1.10-4
ii sra-toolkit 2.10.7+dfsg-1
seqsero recommends no packages.
Versions of packages seqsero suggests:
pn ispcr <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: seqsero
Source-Version: 1.0.1+dfsg-3
Done: Shruti Sridhar <[email protected]>
We believe that the bug you reported is fixed in the latest version of
seqsero, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Shruti Sridhar <[email protected]> (supplier of updated seqsero
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 07 Mar 2021 23:47:46 +0530
Source: seqsero
Architecture: source
Version: 1.0.1+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Shruti Sridhar <[email protected]>
Closes: 970598 984854
Changes:
seqsero (1.0.1+dfsg-3) unstable; urgency=medium
.
* Team Upload.
[ Nilesh Patra ]
* Add test depends on current package,
cleanup test debug statements
.
[ Shruti Sridhar ]
* Update 2to3 patch (Closes: #984854)
* Add autopkgtest. (Closes: #970598)
* Both the above changes are meant as targeted fixes
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seqsero_1.0.1+dfsg-3.debian.tar.xz
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Files:
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seqsero_1.0.1+dfsg-3.debian.tar.xz
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seqsero_1.0.1+dfsg-3_amd64.buildinfo
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