Your message dated Sat, 23 Oct 2021 18:49:40 +0000
with message-id <[email protected]>
and subject line Bug#997067: fixed in gromacs 2021.3-4
has caused the Debian Bug report #997067,
regarding gromacs: FTBFS: ! LaTeX Error: File `tgtermes.sty' not found.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
997067: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997067
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: gromacs
Version: 2021.3-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: [email protected]
Usertags: ftbfs-20211023 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[4]: Entering directory '/<<PKGBUILDDIR>>/build/documentation'
> cd /<<PKGBUILDDIR>>/build/documentation/docs/manual && /usr/bin/sphinx-build
> -q -b latex -w sphinx-latex.log -d ""
> /<<PKGBUILDDIR>>/build/documentation/docs/sphinx-input
> /<<PKGBUILDDIR>>/build/documentation/docs/manual
> WARNING: html_static_path entry '_static' does not exist
> /<<PKGBUILDDIR>>/build/documentation/docs/sphinx-input/user-guide/index.rst:31:
> WARNING: duplicated entry found in toctree: user-guide/cmdline
> /<<PKGBUILDDIR>>/build/documentation/docs/sphinx-input/user-guide/mdrun-performance.rst:31:
> WARNING: duplicate term description of cache, other instance in
> dev-manual/gitlab
> /<<PKGBUILDDIR>>/build/documentation/docs/sphinx-input/user-guide/mdrun-performance.rst:216:
> WARNING: 'any' reference target not found: mdrun
> /<<PKGBUILDDIR>>/build/documentation/docs/sphinx-input/user-guide/mdrun-performance.rst:216:
> WARNING: 'any' reference target not found: mdrun
> cd /<<PKGBUILDDIR>>/build/documentation/docs/manual && /usr/bin/cmake -E
> chdir /<<PKGBUILDDIR>>/build/documentation/docs/manual /usr/bin/pdflatex
> -interaction=nonstopmode gromacs.tex
> This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian)
> (preloaded format=pdflatex)
> restricted \write18 enabled.
> entering extended mode
> (./gromacs.tex
> LaTeX2e <2021-06-01> patch level 1
> L3 programming layer <2021-08-27> (./sphinxmanual.cls
> Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual)
> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
> Document Class: report 2021/02/12 v1.4n Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)))
> (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<<t1.cmap>>)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
> (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def
> (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def))
> (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf))
>
> ! LaTeX Error: File `tgtermes.sty' not found.
>
> Type X to quit or <RETURN> to proceed,
> or enter new name. (Default extension: sty)
>
> Enter file name:
> ! Emergency stop.
> <read *>
>
> l.37 \usepackage
> {tgheros}^^M
> ! ==> Fatal error occurred, no output PDF file produced!
> Transcript written on gromacs.log.
> make[4]: *** [docs/manual/CMakeFiles/pdf.dir/build.make:73:
> docs/manual/gromacs.pdf] Error 1
The full build log is available from:
http://qa-logs.debian.net/2021/10/23/gromacs_2021.3-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: gromacs
Source-Version: 2021.3-4
Done: Nicholas Breen <[email protected]>
We believe that the bug you reported is fixed in the latest version of
gromacs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nicholas Breen <[email protected]> (supplier of updated gromacs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 23 Oct 2021 11:18:36 -0700
Source: gromacs
Architecture: source
Version: 2021.3-4
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Nicholas Breen <[email protected]>
Closes: 997067
Changes:
gromacs (2021.3-4) unstable; urgency=medium
.
* Add Build-Depends-Indep: tex-gyre. (Closes: #997067)
Checksums-Sha1:
f5daaf2a26ab58cf451162d56faf6db17c9af590 2985 gromacs_2021.3-4.dsc
df9e9e8804a7cdb47626a9844bc76562c92f6e91 40532 gromacs_2021.3-4.debian.tar.xz
b45a00c997f9ab0ef67107d6bd9a1d372f2954dc 6120 gromacs_2021.3-4_source.buildinfo
Checksums-Sha256:
11a1520f196e114a175a1a107428fd78c7e9377a6f2ca8c513f36ef9854031df 2985
gromacs_2021.3-4.dsc
ebff7cea1d0370c4647a674e1706965afb6906143b0d5a5e55bfe96ff9d1fdf1 40532
gromacs_2021.3-4.debian.tar.xz
a7c67672cd7a2f830dcb803dc24d9421511818565254b58edc8cc0ae4c6dc9cd 6120
gromacs_2021.3-4_source.buildinfo
Files:
cf9c12ee4e57e508439afb515dd83a0c 2985 science optional gromacs_2021.3-4.dsc
f14760d87ce13bc5cec24fdc9d23714a 40532 science optional
gromacs_2021.3-4.debian.tar.xz
85ce4b2d5844894f561bb2ece1a4b77a 6120 science optional
gromacs_2021.3-4_source.buildinfo
-----BEGIN PGP SIGNATURE-----
iQJGBAEBCAAwFiEEhD5fph5gYziYdtLl7kr9aexlEI8FAmF0VM8SHG5icmVlbkBk
ZWJpYW4ub3JnAAoJEO5K/WnsZRCPLfUP/imK+XPh07LD0LvWoS1LLB5DOsJ4r5WU
KJI9jQGq2NJ+TaY8lvyKX+CMezOAyvvVFWtJ8ZVeO/aPSVlM+q/2X5SGx8cdl/BF
yrzb08bT4Vp+l1g0pMqqmrbuRpmpcTSdmimFCaV+qumFjFPIQgnUvgXLKN4a1u0j
KJ8ceMm4poNPgoynMQlla8eXHQBPoHp2+C8D8umgXO6QIZZkY4qhnk2xYDKTlVLO
7Aq/Ry3rAKnIMHhsGgGJ1UdabbLZTdps7Ve+SuXNyaxnQbdzuPhiB7X+ZiHE8NG9
C9K6W6AX9bFhl6q+hWgx4oHhBAovHCMaLEcbcRxIS7KM+Jq8e/gBc06NvUVqN2ql
1XuPcPJCqqrS7DALyXH+mwNrirKuoUA40v882xOpWKO/11LyWUTbEPLP5e90YKv9
CWUdl/7GkWD6ndf/461ikdPcBtYNubtETN9f2HoPgOeVTybTXTXABuaoQl2xk5/w
6Mh49TbN4nOGZl/Yqq7yLPshI8nPJQYHTwOF8aN4LECx50fpR/Le9xwYKRMKJFyq
MAsxZxytIITeR/iem2nRf5f3C/ZckE6P2VOBQD6Sawj/2sTfE8e0fpetdHJSlMPH
CrS1a/9IAfUp9owNl2IScXOjkS4gW49khGccBsCHj+mQYhnDEpYhfHlJkPGPaAOn
kB/3alyxy/mY
=gdMu
-----END PGP SIGNATURE-----
--- End Message ---