Your message dated Fri, 05 Nov 2021 14:37:12 +0000
with message-id <[email protected]>
and subject line Bug#996138: fixed in ruby-bio 2.0.2-3
has caused the Debian Bug report #996138,
regarding ruby-bio: FTBFS with ruby3.0: ERROR: Test "ruby3.0" failed: Error:
test_target(Bio::TestSiRNAPair): NoMethodError: undefined method `subseq' for
"cuuucggugcggacguaaggagu":String
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
996138: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=996138
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ruby-bio
Version: 2.0.1-2
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: [email protected]
Usertags: ruby3.0
Hi,
We are about to enable building against ruby3.0 on unstable. During a test
rebuild, ruby-bio was found to fail to build in that situation.
To reproduce this locally, you need to install ruby-all-dev from experimental
on an unstable system or build chroot.
Relevant part (hopefully):
> Error: test_target(Bio::TestSiRNAPair): NoMethodError: undefined method
> `subseq' for "cuuucggugcggacguaaggagu":String
> /<<PKGBUILDDIR>>/lib/bio/util/sirna.rb:151:in `block in design'
> /<<PKGBUILDDIR>>/lib/bio/sequence/common.rb:182:in `block in window_search'
> /<<PKGBUILDDIR>>/lib/bio/sequence/common.rb:181:in `step'
> /<<PKGBUILDDIR>>/lib/bio/sequence/common.rb:181:in `window_search'
> /<<PKGBUILDDIR>>/lib/bio/util/sirna.rb:150:in `design'
> /<<PKGBUILDDIR>>/test/unit/bio/util/test_sirna.rb:110:in `setup'
> ===============================================================================
> ...............................................................................
> ...............................................................................
> ...............................................................................
> ...............................................................................
> ...............................................................................
> ........................................................
> Finished in 45.320577728 seconds.
> -------------------------------------------------------------------------------
> 3772 tests, 21042 assertions, 1 failures, 38 errors, 0 pendings, 2 omissions,
> 0 notifications
> 98.9655% passed
> -------------------------------------------------------------------------------
> 83.23 tests/s, 464.29 assertions/s
> ERROR: Test "ruby3.0" failed:
The full build log is available at
https://people.debian.org/~kanashiro/ruby3.0/round2/builds/3/ruby-bio/ruby-bio_2.0.1-2+rebuild1633375682_amd64.build.txt
signature.asc
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: ruby-bio
Source-Version: 2.0.2-3
Done: Nilesh Patra <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ruby-bio, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <[email protected]> (supplier of updated ruby-bio package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 05 Nov 2021 19:27:49 +0530
Source: ruby-bio
Architecture: source
Version: 2.0.2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Ruby Team
<[email protected]>
Changed-By: Nilesh Patra <[email protected]>
Closes: 996138
Changes:
ruby-bio (2.0.2-3) unstable; urgency=medium
.
* Add myself to uploaders
* Pull upstream patch to fix FTBFS with ruby-3.0 (Closes: #996138)
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