Your message dated Sun, 21 Nov 2021 13:04:08 +0000 with message-id <e1momvs-0002x2...@fasolo.debian.org> and subject line Bug#1000317: fixed in cyvcf2 0.30.11-1.1 has caused the Debian Bug report #1000317, regarding cyvcf2: FTBFS with Python 3.10 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1000317: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000317 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: cyvcf2 Version: 0.30.11-1 Severity: serious Tags: ftbfs patch Justification: FTBFS https://buildd.debian.org/status/fetch.php?pkg=cyvcf2&arch=amd64&ver=0.30.11-1%2Bb1&stamp=1637483151&raw=0 Tests fail with: ====================================================================== ERROR: cyvcf2.tests.test_reader.test_info_dict ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 226, in test_info_dict toks = _get_line_for(variant) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 459, in _get_line_for for i, line in enumerate(gzip.open(VCF_PATH), start=1): ValueError: readline of closed file ====================================================================== ERROR: cyvcf2.tests.test_reader.test_gt_types ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 518, in test_gt_types o = _get_samples(variant) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 485, in _get_samples toks = _get_line_for(v) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 459, in _get_line_for for i, line in enumerate(gzip.open(VCF_PATH), start=1): ValueError: readline of closed file ---------------------------------------------------------------------- Ran 95 tests in 0.647s Should be resolved by applying this patch: https://github.com/brentp/cyvcf2/pull/225 I'll do a 0-day NMU for it. SR
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--- Begin Message ---Source: cyvcf2 Source-Version: 0.30.11-1.1 Done: Stefano Rivera <stefa...@debian.org> We believe that the bug you reported is fixed in the latest version of cyvcf2, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1000...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Stefano Rivera <stefa...@debian.org> (supplier of updated cyvcf2 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 21 Nov 2021 08:38:57 -0400 Source: cyvcf2 Architecture: source Version: 0.30.11-1.1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Stefano Rivera <stefa...@debian.org> Closes: 1000317 Changes: cyvcf2 (0.30.11-1.1) unstable; urgency=medium . * Non-maintainer upload. * Patch: Python 3.10 support - avoid a regression in gzip file handles (Closes: #1000317) Checksums-Sha1: dfb4394740af8a82559b07c83113172a462aa8f0 1755 cyvcf2_0.30.11-1.1.dsc 1a3c9f7578c8c6923446774c35cdef20233b6139 6800 cyvcf2_0.30.11-1.1.debian.tar.xz f3379b6e34df8ff666508a71e0549b1799283c1e 6309 cyvcf2_0.30.11-1.1_source.buildinfo Checksums-Sha256: c83263fe6ad481b6a415ee40fa06f6f121b3c8db2d2033b06a592a64b04ca9e7 1755 cyvcf2_0.30.11-1.1.dsc 77b36590b82f4b6fc214c313306b3bfb4da81211b645933080917c79eabed014 6800 cyvcf2_0.30.11-1.1.debian.tar.xz fbe00185d86ce4b44f98ce8632e3fb508340c9a3e34acfcacff095060caf9959 6309 cyvcf2_0.30.11-1.1_source.buildinfo Files: 47371a78863480ffbb5fe1084085e713 1755 science optional cyvcf2_0.30.11-1.1.dsc e74a3693081db39cfd6bf085b3dd5442 6800 science optional cyvcf2_0.30.11-1.1.debian.tar.xz eae759412fff60513922f410ac9f9112 6309 science optional cyvcf2_0.30.11-1.1_source.buildinfo -----BEGIN PGP SIGNATURE----- iIoEARYKADIWIQTumtb5BSD6EfafSCRHew2wJjpU2AUCYZo+mhQcc3RlZmFub3JA ZGViaWFuLm9yZwAKCRBHew2wJjpU2Lq/AQCc/tEOs8YGwZtyHA7+eQjCnNwX/rl1 SdSSnq5VnFuHegEAjLV3F6JlPuq79umsQZZoXA288/Q0T1hei3eEjShseAY= =utzw -----END PGP SIGNATURE-----
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