Your message dated Thu, 25 Nov 2021 02:33:51 +0000
with message-id <[email protected]>
and subject line Bug#999519: fixed in xrayutilities 1.7.1-2.1
has caused the Debian Bug report #999519,
regarding xrayutilities: FTBFS with matplotlib 3.5 (in experimental):
dh_auto_test: error: pybuild --test -i python{version} -p 3.9 -s custom
"--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd
{build_dir}; {interpreter} -m unittest2 discover -v;" returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
999519: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=999519
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: xrayutilities
Version: 1.7.1-2
Severity: important
Justification: FTBFS
Tags: bookworm sid ftbfs
User: [email protected]
Usertags: ftbfs-matplotlib35
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64, using matplotlib 3.5 currently in experimental. This version
will soon be uploaded to unstable.
If you have questions about this, please contact Sandro Tosi
<[email protected]>.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_test -- -s custom --test-args="{interpreter} {dir}/setup.py egg_info
> -e {build_dir}; cd {build_dir}; {interpreter} -m unittest2 discover -v;"
> pybuild --test -i python{version} -p 3.9 -s custom
> "--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd
> {build_dir}; {interpreter} -m unittest2 discover -v;"
> I: pybuild pybuild:285: cp -r tests
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build; cp -r examples
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build; cp -r
> lib/xrayutilities/materials/data
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities/materials/
> I: pybuild base:232: python3.9 /<<PKGBUILDDIR>>/setup.py egg_info -e
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build; cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build; python3.9 -m
> unittest2 discover -v;
> running egg_info
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info
> writing
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/PKG-INFO
> writing dependency_links to
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/dependency_links.txt
> writing requirements to
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/requires.txt
> writing top-level names to
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/top_level.txt
> writing manifest file
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/SOURCES.txt'
> reading manifest file
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no previously-included files matching '.gitignore' found anywhere in
> distribution
> warning: no previously-included files found matching '.coveragerc'
> warning: no previously-included files found matching 'tox.ini'
> warning: no previously-included files found matching 'release.txt'
> adding license file 'LICENSE.txt'
> writing manifest file
> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities.egg-info/SOURCES.txt'
> test_Q2Ang_hxrd_geom_hi_lo (tests.test_HXRD.TestQ2Ang_HXRD) ... ok
> test_Q2Ang_hxrd_geom_lo_hi (tests.test_HXRD.TestQ2Ang_HXRD) ... ok
> test_Q2Ang_hxrd_geom_real (tests.test_HXRD.TestQ2Ang_HXRD) ... ok
> test_Q2Ang_hxrd_geom_realTilt (tests.test_HXRD.TestQ2Ang_HXRD) ... ok
> test_Q2Ang_hxrd_point (tests.test_HXRD.TestQ2Ang_HXRD) ... ok
> test_Q2Ang_nonCOP_point (tests.test_NonCOP.TestQ2Ang_nonCOP) ... ok
> test_Q2Ang_nonCOP_point2 (tests.test_NonCOP.TestQ2Ang_nonCOP) ... ok
> test_ContentAsym (tests.test_alloy_content_calc.TestAlloyContentCalc) ... ok
> test_ContentSym (tests.test_alloy_content_calc.TestAlloyContentCalc) ... ok
> test_composition (tests.test_amorphous.Test_maplog) ... ok
> test_elements (tests.test_amorphous.Test_maplog) ... ok
> test_arbitrary_cut (tests.test_analysis_linecuts.Test_analysis_linecuts) ...
> ok
> test_omega_cut (tests.test_analysis_linecuts.Test_analysis_linecuts) ... ok
> test_qcut_width (tests.test_analysis_linecuts.Test_analysis_linecuts) ... ok
> test_qy_cut (tests.test_analysis_linecuts.Test_analysis_linecuts) ... ok
> test_qz_cut (tests.test_analysis_linecuts.Test_analysis_linecuts) ... ok
> test_radial_cut (tests.test_analysis_linecuts.Test_analysis_linecuts) ... ok
> test_ttheta_cut (tests.test_analysis_linecuts.Test_analysis_linecuts) ... ok
> test_area_calib (tests.test_area_calib.TestArea_calib) ... skipped 'this test
> is not running on CI or additional test data are needed
> (http://xrayutilities.sf.io)'
> test_area_calib_hkl (tests.test_area_calib.TestArea_calib) ... skipped 'this
> test is not running on CI or additional test data are needed
> (http://xrayutilities.sf.io)'
> test_blockav1d (tests.test_blockaverage.TestBlockAverageFunctions) ... ok
> test_blockav2d (tests.test_blockaverage.TestBlockAverageFunctions) ... ok
> test_blockav_psd (tests.test_blockaverage.TestBlockAverageFunctions) ... ok
> test_datashape (tests.test_ccd_normalizer.TestCCD_Normalizer) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_ccd_normalizer.TestCCD_Normalizer) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_simpack_powdermodel (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrd_AlGaAs (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrd_Darwin_AlGaAs (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrd_InAs_fitting (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrd_SiGe (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrd_SiGe111 (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrd_SiGe_asymmmetric (tests.test_examples.TestExampleScripts)
> ... ok
> test_simpack_xrd_SiGe_superlattice (tests.test_examples.TestExampleScripts)
> ... ok
> test_simpack_xrr_SiO2_Ru_CoFe_IrMn_Al2O3
> (tests.test_examples.TestExampleScripts) ... Traceback (most recent call
> last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/examples/simpack_xrr_SiO2_Ru_CoFe_IrMn_Al2O3.py",
> line 57, in <module>
> res = fitm.fit(edata, p, ai, weights=1/eps)
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities/simpack/fit.py",
> line 257, in fit
> self.fitplot.plot_init(x, data, weights, initmodel, mask, self.verbose)
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities/simpack/fit.py",
> line 211, in plot_init
> self.ax.set_yscale("log", nonposy='clip')
> File "/usr/lib/python3/dist-packages/matplotlib/axes/_base.py", line 4100,
> in set_yscale
> ax.yaxis._set_scale(value, **kwargs)
> File "/usr/lib/python3/dist-packages/matplotlib/axis.py", line 761, in
> _set_scale
> self._scale = mscale.scale_factory(value, self, **kwargs)
> File "/usr/lib/python3/dist-packages/matplotlib/scale.py", line 597, in
> scale_factory
> return scale_cls(axis, **kwargs)
> TypeError: __init__() got an unexpected keyword argument 'nonposy'
> ERROR
> test_simpack_xrr_diffuse (tests.test_examples.TestExampleScripts) ... ok
> test_simpack_xrr_matrixmethod (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_angular2hkl_conversion
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_components_of_the_structure_factor
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_define_material (tests.test_examples.TestExampleScripts)
> ... ok
> test_xrayutilities_energy_dependent_structure_factor
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_experiment_Powder_example_Iron
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_experiment_angle_calculation
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_experiment_kappa (tests.test_examples.TestExampleScripts)
> ... ok
> test_xrayutilities_fuzzygridding (tests.test_examples.TestExampleScripts) ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/examples/xrayutilities_fuzzygridding.py:83:
> UserWarning: The input coordinates to pcolormesh are interpreted as cell
> centers, but are not monotonically increasing or decreasing. This may lead to
> incorrectly calculated cell edges, in which case, please supply explicit cell
> edges to pcolormesh.
> plt.pcolormesh(qy, qz, psd, norm=LogNorm(MIN, MAX))
> ok
> test_xrayutilities_hotpixelkill_variant
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_id01_functions (tests.test_examples.TestExampleScripts)
> ... ok
> test_xrayutilities_io_cif_parser (tests.test_examples.TestExampleScripts) ...
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/xrayutilities/experiment.py:1398:
> UserWarning: Experiment: given inplane direction is not perpendicular to
> normal direction
> -> Experiment class uses the following direction with the same azimuth:
> -0.606 0.432 0.668
> warnings.warn("Experiment: given inplane direction is not "
> ok
> test_xrayutilities_io_cif_parser_bi2te3
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_materials_Alloy_contentcalc
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_math_fitting (tests.test_examples.TestExampleScripts) ...
> ok
> test_xrayutilities_orientation_matrix
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_peak_angles_beamtime
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_q2ang_general (tests.test_examples.TestExampleScripts) ...
> ok
> test_xrayutilities_read_panalytical (tests.test_examples.TestExampleScripts)
> ... ok
> test_xrayutilities_read_spec (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_reflection_strength
> (tests.test_examples.TestExampleScripts) ... ok
> test_xrayutilities_show_reciprocal_space_plane
> (tests.test_examples.TestExampleScripts) ... ok
> test_derivatives (tests.test_functions.TestMathFunctions) ... ok
> test_gauss1darea (tests.test_functions.TestMathFunctions) ... ok
> test_gauss1dwidth (tests.test_functions.TestMathFunctions) ... ok
> test_gauss2darea (tests.test_functions.TestMathFunctions) ... ok
> test_lorentz1darea (tests.test_functions.TestMathFunctions) ... ok
> test_lorentz1dwidth (tests.test_functions.TestMathFunctions) ... ok
> test_normedgauss1d (tests.test_functions.TestMathFunctions) ... ok
> test_pvoigt1darea (tests.test_functions.TestMathFunctions) ... ok
> test_pvoigt1dwidth (tests.test_functions.TestMathFunctions) ... ok
> test_gridder1d_axis (tests.test_fuzzygridder1d.TestFuzzyGridder1D) ... ok
> test_gridder1d_data (tests.test_fuzzygridder1d.TestFuzzyGridder1D) ... ok
> test_fuzzygridder2d_data (tests.test_fuzzygridder2d.TestFuzzyGridder2D) ... ok
> test_gridder2d_xaxis (tests.test_fuzzygridder2d.TestFuzzyGridder2D) ... ok
> test_gridder2d_yaxis (tests.test_fuzzygridder2d.TestFuzzyGridder2D) ... ok
> test_fuzzygridder3d_data (tests.test_fuzzygridder3d.TestFuzzyGridder3D) ... ok
> test_gridder3d_xaxis (tests.test_fuzzygridder3d.TestFuzzyGridder3D) ... ok
> test_gridder3d_yaxis (tests.test_fuzzygridder3d.TestFuzzyGridder3D) ... ok
> test_gridder3d_zaxis (tests.test_fuzzygridder3d.TestFuzzyGridder3D) ... ok
> test_getang001 (tests.test_getang.TestGetAngles) ... ok
> test_getang111 (tests.test_getang.TestGetAngles) ... ok
> test_getunitvector (tests.test_getang.TestGetAngles) ... ok
> test_gridder1d_axis (tests.test_gridder1d.TestGridder1D) ... ok
> test_gridder1d_data (tests.test_gridder1d.TestGridder1D) ... ok
> test_gridder2d_data (tests.test_gridder2d.TestGridder2D) ... ok
> test_gridder2d_xaxis (tests.test_gridder2d.TestGridder2D) ... ok
> test_gridder2d_yaxis (tests.test_gridder2d.TestGridder2D) ... ok
> test_gridder2d_data (tests.test_gridder2dlist.TestGridder2DList) ... ok
> test_gridder3d_data (tests.test_gridder3d.TestGridder3D) ... ok
> test_gridder3d_xaxis (tests.test_gridder3d.TestGridder3D) ... ok
> test_gridder3d_yaxis (tests.test_gridder3d.TestGridder3D) ... ok
> test_gridder3d_zaxis (tests.test_gridder3d.TestGridder3D) ... ok
> test_CBFDirectory (tests.test_io_cbf.TestIO_CBF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_cbf.TestIO_CBF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_cbf.TestIO_CBF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_savehdf5 (tests.test_io_cbf.TestIO_CBF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_EDFDirectory (tests.test_io_edf.TestIO_EDF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_edf.TestIO_EDF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_edf.TestIO_EDF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_savehdf5 (tests.test_io_edf.TestIO_EDF) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_esg.TestIO_ESG) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_esg.TestIO_ESG) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_fastscan.TestIO_FastScan) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_fastscan.TestIO_FastScan) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_grid2D (tests.test_io_fastscan.TestIO_FastScan) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_fio.TestIO_FIO) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_fio.TestIO_FIO) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_hdf5file (tests.test_io_fio.TestIO_FIO) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_normalizer (tests.test_io_fio.TestIO_FIO) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_nja.TestIO_NJA) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_nja.TestIO_NJA) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_headervalue (tests.test_io_nja.TestIO_NJA) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_nja_map.TestIO_map_NJA) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_nja_map.TestIO_map_NJA) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_nja_tsk.TestIO_task_NJA) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_nja_tsk.TestIO_task_NJA) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_numor.TestIO_numor) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_numor.TestIO_numor) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_equaldata (tests.test_io_numor.TestIO_numor) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_pdcif.TestIO_pdCIF) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_pdcif.TestIO_pdCIF) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_perkinelmer.TestIO_PerkinElmer) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_perkinelmer.TestIO_PerkinElmer) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_tiffread (tests.test_io_perkinelmer.TestIO_PerkinElmer) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_pilatus.TestIO_Pilatus) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_pilatus.TestIO_Pilatus) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datamethods (tests.test_io_rigaku.TestIO_Rigaku) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape_all (tests.test_io_rigaku.TestIO_Rigaku) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datashape_ras (tests.test_io_rigaku.TestIO_Rigaku) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_rigaku.TestIO_Rigaku) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_roperccd.TestIO_RoperCCD) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_roperccd.TestIO_RoperCCD) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datamethods (tests.test_io_spec.TestIO_SPEC) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_spec.TestIO_SPEC) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_spec.TestIO_SPEC) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_getheader (tests.test_io_spec.TestIO_SPEC) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_hdf5file (tests.test_io_spec.TestIO_SPEC) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_iterations (tests.test_io_specalignmentlog.TestIO_SPEC_RA_Log) ...
> skipped 'additional test data needed (http://xrayutilities.sf.io)'
> test_peaknames (tests.test_io_specalignmentlog.TestIO_SPEC_RA_Log) ...
> skipped 'additional test data needed (http://xrayutilities.sf.io)'
> test_linenumber (tests.test_io_speclog.TestIO_SPECLog) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datashape_aborted (tests.test_io_specsardana.TestIO_SPEC_Sardana) ...
> skipped 'additional test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_specsardana.TestIO_SPEC_Sardana) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_init_mopo (tests.test_io_specsardana.TestIO_SPEC_Sardana) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_tty.TestIO_TTY) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_tty.TestIO_TTY) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_equaldata (tests.test_io_tty.TestIO_TTY) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_datamethods (tests.test_io_xrdml.TestIO_XRDML) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datashape (tests.test_io_xrdml.TestIO_XRDML) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_datavalues (tests.test_io_xrdml.TestIO_XRDML) ... skipped 'additional
> test data needed (http://xrayutilities.sf.io)'
> test_version2 (tests.test_io_xrdml.TestIO_XRDML) ... skipped 'additional test
> data needed (http://xrayutilities.sf.io)'
> test_linear_calib (tests.test_linear_calib.TestLinear_calib) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_maplog (tests.test_maplog.Test_maplog) ... ok
> test_maplogzero (tests.test_maplog.Test_maplog) ... ok
> test_Bmatrix (tests.test_materials.TestMaterialsTransform)
> check if our B matrix is compatible with the one from ... ok
> test_Bmatrix_after_a_setter (tests.test_materials.TestMaterialsTransform) ...
> ok
> test_Bmatrix_after_all_setters (tests.test_materials.TestMaterialsTransform)
> ... ok
> test_Bmatrix_after_alpha_setter (tests.test_materials.TestMaterialsTransform)
> ... ok
> test_environment (tests.test_materials.TestMaterialsTransform) ... ok
> test_environment_Si (tests.test_materials.TestMaterialsTransform) ... ok
> test_isequivalent (tests.test_materials.TestMaterialsTransform) ... ok
> test_q2hkl_hkl2q (tests.test_materials.TestMaterialsTransform) ... ok
> test_latticeparameters (tests.test_materials_cif.TestMAT_CIF) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_spacegroup (tests.test_materials_cif.TestMAT_CIF) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_structurefactor (tests.test_materials_cif.TestMAT_CIF) ... skipped
> 'additional test data needed (http://xrayutilities.sf.io)'
> test_export (tests.test_materials_cifexport.Test_CIF_export) ... ok
> test_db_f0 (tests.test_materials_database.TestDatabase) ... ok
> test_db_f1 (tests.test_materials_database.TestDatabase) ... ok
> test_db_f1_neg (tests.test_materials_database.TestDatabase) ... ok
> test_db_f2 (tests.test_materials_database.TestDatabase) ... ok
> test_db_f2_neg (tests.test_materials_database.TestDatabase) ... ok
> test_owndb_f0 (tests.test_materials_database.TestDatabase) ... ok
> test_owndb_f1 (tests.test_materials_database.TestDatabase) ... ok
> test_owndb_f1_neg (tests.test_materials_database.TestDatabase) ... ok
> test_owndb_f2 (tests.test_materials_database.TestDatabase) ... ok
> test_owndb_f2_neg (tests.test_materials_database.TestDatabase) ... ok
> test_findsym (tests.test_materials_findsym.Test_findsym)
> Test that built in materials use the highest possible space group ... ok
> test_get_allowed_hkl
> (tests.test_materials_hklcond.Test_Materials_reflection_condition)
> use some random hkls to test the get_allowed_hkl function. The internal ... ok
> test_hklcond_predefined
> (tests.test_materials_hklcond.Test_Materials_reflection_condition) ... ok
> test_hklcond_random
> (tests.test_materials_hklcond.Test_Materials_reflection_condition) ... ok
> test_SymOp_fromxyz (tests.test_materials_symop.TestMaterialsSymOp)
> tests that the creation of the symmetry operations from the xyz string ... ok
> test_Wyckoff_consistency (tests.test_materials_symop.TestMaterialsSymOp)
> tests that all Wyckoff positions are consistent with the symmetry ... ok
> test_equivalent_hkl (tests.test_materials_symop.TestMaterialsSymOp) ... ok
> test_iscentrosymmetric (tests.test_materials_symop.TestMaterialsSymOp) ... ok
> test_gaussfit (tests.test_math_peak_fit.TestPeakFit) ... ok
> test_gaussfit_linear (tests.test_math_peak_fit.TestPeakFit) ... ok
> test_lorentzfit (tests.test_math_peak_fit.TestPeakFit) ... ok
> test_lorentzfit_linear (tests.test_math_peak_fit.TestPeakFit) ... ok
> test_pvoigtfit (tests.test_math_peak_fit.TestPeakFit) ... ok
> test_pvoigtfit_linear (tests.test_math_peak_fit.TestPeakFit) ... ok
> test_solver (tests.test_math_solve_quartic.TestSolveQuartic) ... ok
> test_distance (tests.test_math_vector.TestMathVector) ... ok
> test_miscut2pom0 (tests.test_miscut_calc.TestMiscutCalc) ... ok
> test_miscut3 (tests.test_miscut_calc.TestMiscutCalc) ... ok
> test_miscut4 (tests.test_miscut_calc.TestMiscutCalc) ... ok
> test_npygridder1d_axis (tests.test_npygridder1d.TestNpyGridder1D) ... ok
> test_npygridder1d_data (tests.test_npygridder1d.TestNpyGridder1D) ... ok
> test_chi0 (tests.test_optical_properties.TestOpticalProperties) ... ok
> test_delta_beta (tests.test_optical_properties.TestOpticalProperties) ... ok
> test_idx_refraction (tests.test_optical_properties.TestOpticalProperties) ...
> ok
> test_pseudomoprhic001 (tests.test_pseudomorphic.TestPseudomorphic) ... ok
> test_pseudomorphic111 (tests.test_pseudomorphic.TestPseudomorphic) ... ok
> test_q2angfit (tests.test_q2angfit.TestQ2AngFit) ... ok
> test_qconversion_detpos (tests.test_qconversion.TestQConversion) ... ok
> test_qconversion_energy (tests.test_qconversion.TestQConversion) ... ok
> test_qconversion_point (tests.test_qconversion.TestQConversion) ... ok
> test_qconversion_point_asym (tests.test_qconversion.TestQConversion) ... ok
> test_qconversion_area (tests.test_qconversion_area.TestQConversion) ... ok
> test_qconversion_area_asym (tests.test_qconversion_area.TestQConversion) ...
> ok
> test_qconversion_area_detpos (tests.test_qconversion_area.TestQConversion)
> ... ok
> test_qconversion_area_distance (tests.test_qconversion_area.TestQConversion)
> ... ok
> test_qconversion_area_energy (tests.test_qconversion_area.TestQConversion)
> ... ok
> test_qconversion_linear (tests.test_qconversion_linear.TestQConversion) ... ok
> test_qconversion_linear_asym (tests.test_qconversion_linear.TestQConversion)
> ... ok
> test_qconversion_linear_detpos
> (tests.test_qconversion_linear.TestQConversion) ... ok
> test_qconversion_linear_energy
> (tests.test_qconversion_linear.TestQConversion) ... ok
> test_qtrans0 (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans0_area (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans0_linear (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans45 (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans45_area (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans45_linear (tests.test_qconversion_trans.TestQConversionTrans) ...
> ok
> test_qtrans90 (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans90_area (tests.test_qconversion_trans.TestQConversionTrans) ... ok
> test_qtrans90_linear (tests.test_qconversion_trans.TestQConversionTrans) ...
> ok
> test_Calculation (tests.test_simpack_dynamicalmodel.Test_DynamicalModel) ...
> ok
> test_Consistency (tests.test_simpack_dynamicalmodel.Test_DynamicalModel) ...
> ok
> test_FitModel_eval (tests.test_simpack_dynamicalmodel.Test_DynamicalModel)
> ... ok
> test_FitModel_eval_dyn
> (tests.test_simpack_dynamicalmodel.Test_DynamicalModel) ... ok
> test_Calculation (tests.test_simpack_kinematicalmodel.Test_KinematicalModel)
> ... ok
> test_Consistency (tests.test_simpack_kinematicalmodel.Test_KinematicalModel)
> ... ok
> test_FitModel_eval
> (tests.test_simpack_kinematicalmodel.Test_KinematicalModel) ... ok
> test_FitModel_eval_mult
> (tests.test_simpack_kinematicalmodel.Test_KinematicalModel) ... ok
> test_Calculation (tests.test_simpack_powdermodel.Test_PowderModel) ...
> skipped 'additional test data (see http://xrayutilities.sf.io) and the lmfit
> Python package are needed'
> test_fitting (tests.test_simpack_powdermodel.Test_PowderModel) ... skipped
> 'additional test data (see http://xrayutilities.sf.io) and the lmfit Python
> package are needed'
> test_multiprocessing (tests.test_simpack_powdermodel.Test_PowderModel) ...
> skipped 'additional test data (see http://xrayutilities.sf.io) and the lmfit
> Python package are needed'
> test_Calculation
> (tests.test_simpack_xrrdiffuse.Test_DiffuseReflectivityModel) ... ok
> test_Consistency
> (tests.test_simpack_xrrdiffuse.Test_DiffuseReflectivityModel) ... ok
> test_Calculation
> (tests.test_simpack_xrrspecular.Test_SpecularReflectivityModel) ... ok
> test_FitModel_eval
> (tests.test_simpack_xrrspecular.Test_SpecularReflectivityModel) ... ok
> test_densityprofile
> (tests.test_simpack_xrrspecular.Test_SpecularReflectivityModel) ... ok
> test_StructureFactor (tests.test_structure_factor.TestStructureFactor) ... ok
> test_StructureFactorE (tests.test_structure_factor.TestStructureFactor) ... ok
> test_StructureFactorQ (tests.test_structure_factor.TestStructureFactor) ... ok
> test_Axis2Z (tests.test_transforms.TestTransforms) ... ok
> test_Xrot (tests.test_transforms.TestTransforms) ... ok
> test_Yrot (tests.test_transforms.TestTransforms) ... ok
> test_Zrot (tests.test_transforms.TestTransforms) ... ok
> test_arbrot (tests.test_transforms.TestTransforms) ... ok
>
> ======================================================================
> ERROR: test_simpack_xrr_SiO2_Ru_CoFe_IrMn_Al2O3
> (tests.test_examples.TestExampleScripts)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build/tests/test_examples.py",
> line 78, in test
> subprocess.run(cmd, env=env, cwd=scriptdir, stdout=fid,
> File "/usr/lib/python3.9/subprocess.py", line 528, in run
> raise CalledProcessError(retcode, process.args,
> subprocess.CalledProcessError: Command '['/usr/bin/python3.9',
> 'simpack_xrr_SiO2_Ru_CoFe_IrMn_Al2O3.py']' returned non-zero exit status 1.
>
> ----------------------------------------------------------------------
> Ran 244 tests in 166.113s
>
> FAILED (errors=1, skipped=69)
> E: pybuild pybuild:354: test: plugin custom failed with: exit code=1:
> python3.9 /<<PKGBUILDDIR>>/setup.py egg_info -e
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build; cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_xrayutilities/build; python3.9 -m
> unittest2 discover -v;
> rm -fr -- /tmp/dh-xdg-rundir-NekCBuUS
> dh_auto_test: error: pybuild --test -i python{version} -p 3.9 -s custom
> "--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd
> {build_dir}; {interpreter} -m unittest2 discover -v;" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/http://qa-logs.debian.net/2021/11/numpy-matplotlib/matplotlib-exp/xrayutilities_1.7.1-2_unstable_matplotlib-exp.log
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: xrayutilities
Source-Version: 1.7.1-2.1
Done: Stefano Rivera <[email protected]>
We believe that the bug you reported is fixed in the latest version of
xrayutilities, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Stefano Rivera <[email protected]> (supplier of updated xrayutilities package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 22 Nov 2021 21:22:36 -0400
Source: xrayutilities
Architecture: source
Version: 1.7.1-2.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Stefano Rivera <[email protected]>
Closes: 999519
Changes:
xrayutilities (1.7.1-2.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Patch: matplotlib 3.5 support (Closes: #999519)
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