Bug#1001718: marked as done (astroscrappy breaks ccdproc autopkgtest: detect_cosmics() got an unexpected keyword argument 'pssl')

Debian Bug Tracking System Tue, 14 Dec 2021 22:57:19 -0800

Your message dated Wed, 15 Dec 2021 07:53:01 +0100
with message-id <[email protected]>
and subject line Re: astroscrappy breaks ccdproc autopkgtest: detect_cosmics() 
got an unexpected keyword argument 'pssl'
has caused the Debian Bug report #1001718,
regarding astroscrappy breaks ccdproc autopkgtest: detect_cosmics() got an 
unexpected keyword argument 'pssl'
to be marked as done.


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1001718: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1001718
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--- Begin Message ---
Source: astroscrappy, ccdproc
Control: found -1 astroscrappy/1.1.0-1
Control: found -1 ccdproc/2.2.0-1
Severity: serious
Tags: sid bookworm
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: breaks needs-update

Dear maintainer(s),
With a recent upload of astroscrappy the autopkgtest of ccdproc fails in testing when that autopkgtest is run with the binary packages of astroscrappy from unstable. It passes when run with only packages from testing. In tabular form:
                       pass            fail
astroscrappy           from testing    1.1.0-1
ccdproc                from testing    2.2.0-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of astroscrappy to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=astroscrappy

https://ci.debian.net/data/autopkgtest/testing/amd64/c/ccdproc/17555299/log.gz
=================================== FAILURES =================================== ________________ test_cosmicray_lacosmic_does_not_change_input _________________
    def test_cosmicray_lacosmic_does_not_change_input():
        ccd_data = ccd_data_func()
        original = ccd_data.copy()
        error = np.zeros_like(ccd_data)
      ccd = cosmicray_lacosmic(ccd_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_ccdproc.py:794: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
___________________________ test_cosmicray_lacosmic ____________________________
    def test_cosmicray_lacosmic():
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
      data, crarr = cosmicray_lacosmic(ccd_data.data, sigclip=5)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:38: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1491: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
_______________________ test_cosmicray_lacosmic_ccddata ________________________
    def test_cosmicray_lacosmic_ccddata():
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
      nccd_data = cosmicray_lacosmic(ccd_data, sigclip=5)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ____________________ test_cosmicray_gain_correct[True-True] ____________________
array_input = True, gain_correct_data = True

    @pytest.mark.parametrize('array_input', [True, False])
    @pytest.mark.parametrize('gain_correct_data', [True, False])
    def test_cosmicray_gain_correct(array_input, gain_correct_data):
        # Add regression check for #705 and for the new gain_correct
        # argument.
        # The issue is that cosmicray_lacosmic gain-corrects the
        # data and returns that gain corrected data. That is not the
        # intent...
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        # No units here on purpose.
        gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
        # make lack of units explicit.
        readnoise = 6.5
        if array_input:
          new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                   gain=gain,

gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:86: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1491: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ___________________ test_cosmicray_gain_correct[True-False] ____________________
array_input = False, gain_correct_data = True

    @pytest.mark.parametrize('array_input', [True, False])
    @pytest.mark.parametrize('gain_correct_data', [True, False])
    def test_cosmicray_gain_correct(array_input, gain_correct_data):
        # Add regression check for #705 and for the new gain_correct
        # argument.
        # The issue is that cosmicray_lacosmic gain-corrects the
        # data and returns that gain corrected data. That is not the
        # intent...
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        # No units here on purpose.
        gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
        # make lack of units explicit.
        readnoise = 6.5
        if array_input:
            new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                   gain=gain,

gain_apply=gain_correct_data)
        else:
          new_ccd = cosmicray_lacosmic(ccd_data,
                                         gain=gain,
                                         gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ___________________ test_cosmicray_gain_correct[False-True] ____________________
array_input = True, gain_correct_data = False

    @pytest.mark.parametrize('array_input', [True, False])
    @pytest.mark.parametrize('gain_correct_data', [True, False])
    def test_cosmicray_gain_correct(array_input, gain_correct_data):
        # Add regression check for #705 and for the new gain_correct
        # argument.
        # The issue is that cosmicray_lacosmic gain-corrects the
        # data and returns that gain corrected data. That is not the
        # intent...
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        # No units here on purpose.
        gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
        # make lack of units explicit.
        readnoise = 6.5
        if array_input:
          new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                   gain=gain,

gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:86: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1491: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ___________________ test_cosmicray_gain_correct[False-False] ___________________
array_input = False, gain_correct_data = False

    @pytest.mark.parametrize('array_input', [True, False])
    @pytest.mark.parametrize('gain_correct_data', [True, False])
    def test_cosmicray_gain_correct(array_input, gain_correct_data):
        # Add regression check for #705 and for the new gain_correct
        # argument.
        # The issue is that cosmicray_lacosmic gain-corrects the
        # data and returns that gain corrected data. That is not the
        # intent...
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        # No units here on purpose.
        gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
        # make lack of units explicit.
        readnoise = 6.5
        if array_input:
            new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                   gain=gain,

gain_apply=gain_correct_data)
        else:
          new_ccd = cosmicray_lacosmic(ccd_data,
                                         gain=gain,
                                         gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ________________ test_cosmicray_lacosmic_accepts_quantity_gain _________________
    def test_cosmicray_lacosmic_accepts_quantity_gain():
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        # The units below are the point of the test
        gain = 2.0 * u.electron / u.adu
            # Since gain and ccd_data have units, the readnoise should too.
        readnoise = 6.5 * u.electron
      new_ccd = cosmicray_lacosmic(ccd_data,
                                     gain=gain,
                                     gain_apply=True)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:118: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ______________ test_cosmicray_lacosmic_accepts_quantity_readnoise ______________
    def test_cosmicray_lacosmic_accepts_quantity_readnoise():
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        gain = 2.0 * u.electron / u.adu
        # The units below are the point of this test
        readnoise = 6.5 * u.electron
      new_ccd = cosmicray_lacosmic(ccd_data,
                                     gain=gain,
                                     gain_apply=True,
                                     readnoise=readnoise)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:132: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ______________ test_cosmicray_lacosmic_warns_on_ccd_in_electrons _______________
recwarn = WarningsRecorder(record=True)

    def test_cosmicray_lacosmic_warns_on_ccd_in_electrons(recwarn):
        # Check that an input ccd in electrons raises a warning.
        ccd_data = ccd_data_func(data_scale=DATA_SCALE)
        # The unit below is important for the test; this unit on
        # input is supposed to raise an error.
        ccd_data.unit = u.electron
        threshold = 5
        add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
        noise = DATA_SCALE * np.ones_like(ccd_data.data)
        ccd_data.uncertainty = noise
        # No units here on purpose.
        gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
        # make lack of units explicit.
        readnoise = 6.5
      new_ccd = cosmicray_lacosmic(ccd_data,
                                     gain=gain,
                                     gain_apply=True,
                                     readnoise=readnoise)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:175: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
    crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty.
OpenPGP_signature
Description: OpenPGP digital signature

--- End Message ---

--- Begin Message ---
Source: ccdproc
Source-Version: 2.2.0-2
This is already fixed in the upload of ccdproc 5 days ago. It just doesn't migrate because astropy didn't migrate yet because matplotlib didn't migrate yet because of a few RC bugs.
Best

Ole

On 14.12.21 21:10, Paul Gevers wrote:
Source: astroscrappy, ccdproc
Control: found -1 astroscrappy/1.1.0-1
Control: found -1 ccdproc/2.2.0-1
Severity: serious
Tags: sid bookworm
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: breaks needs-update

Dear maintainer(s),
With a recent upload of astroscrappy the autopkgtest of ccdproc fails in testing when that autopkgtest is run with the binary packages of astroscrappy from unstable. It passes when run with only packages from testing. In tabular form:
                        pass            fail
astroscrappy           from testing    1.1.0-1
ccdproc                from testing    2.2.0-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of astroscrappy to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=astroscrappy
https://ci.debian.net/data/autopkgtest/testing/amd64/c/ccdproc/17555299/log.gz
=================================== FAILURES =================================== ________________ test_cosmicray_lacosmic_does_not_change_input _________________
     def test_cosmicray_lacosmic_does_not_change_input():
         ccd_data = ccd_data_func()
         original = ccd_data.copy()
         error = np.zeros_like(ccd_data)
      ccd = cosmicray_lacosmic(ccd_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_ccdproc.py:794: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
___________________________ test_cosmicray_lacosmic ____________________________
     def test_cosmicray_lacosmic():
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
      data, crarr = cosmicray_lacosmic(ccd_data.data, sigclip=5)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:38: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1491: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
_______________________ test_cosmicray_lacosmic_ccddata ________________________
     def test_cosmicray_lacosmic_ccddata():
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
      nccd_data = cosmicray_lacosmic(ccd_data, sigclip=5)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:52: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ____________________ test_cosmicray_gain_correct[True-True] ____________________
array_input = True, gain_correct_data = True

     @pytest.mark.parametrize('array_input', [True, False])
     @pytest.mark.parametrize('gain_correct_data', [True, False])
     def test_cosmicray_gain_correct(array_input, gain_correct_data):
         # Add regression check for #705 and for the new gain_correct
         # argument.
         # The issue is that cosmicray_lacosmic gain-corrects the
         # data and returns that gain corrected data. That is not the
         # intent...
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         # No units here on purpose.
         gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
         # make lack of units explicit.
         readnoise = 6.5
         if array_input:
          new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                    gain=gain,

gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:86: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1491: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ___________________ test_cosmicray_gain_correct[True-False] ____________________
array_input = False, gain_correct_data = True

     @pytest.mark.parametrize('array_input', [True, False])
     @pytest.mark.parametrize('gain_correct_data', [True, False])
     def test_cosmicray_gain_correct(array_input, gain_correct_data):
         # Add regression check for #705 and for the new gain_correct
         # argument.
         # The issue is that cosmicray_lacosmic gain-corrects the
         # data and returns that gain corrected data. That is not the
         # intent...
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         # No units here on purpose.
         gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
         # make lack of units explicit.
         readnoise = 6.5
         if array_input:
             new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                    gain=gain,

gain_apply=gain_correct_data)
         else:
          new_ccd = cosmicray_lacosmic(ccd_data,
                                          gain=gain,
                                          gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ___________________ test_cosmicray_gain_correct[False-True] ____________________
array_input = True, gain_correct_data = False

     @pytest.mark.parametrize('array_input', [True, False])
     @pytest.mark.parametrize('gain_correct_data', [True, False])
     def test_cosmicray_gain_correct(array_input, gain_correct_data):
         # Add regression check for #705 and for the new gain_correct
         # argument.
         # The issue is that cosmicray_lacosmic gain-corrects the
         # data and returns that gain corrected data. That is not the
         # intent...
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         # No units here on purpose.
         gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
         # make lack of units explicit.
         readnoise = 6.5
         if array_input:
          new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                    gain=gain,

gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:86: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1491: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ___________________ test_cosmicray_gain_correct[False-False] ___________________
array_input = False, gain_correct_data = False

     @pytest.mark.parametrize('array_input', [True, False])
     @pytest.mark.parametrize('gain_correct_data', [True, False])
     def test_cosmicray_gain_correct(array_input, gain_correct_data):
         # Add regression check for #705 and for the new gain_correct
         # argument.
         # The issue is that cosmicray_lacosmic gain-corrects the
         # data and returns that gain corrected data. That is not the
         # intent...
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         # No units here on purpose.
         gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
         # make lack of units explicit.
         readnoise = 6.5
         if array_input:
             new_data, cr_mask = cosmicray_lacosmic(ccd_data.data,
                                                    gain=gain,

gain_apply=gain_correct_data)
         else:
          new_ccd = cosmicray_lacosmic(ccd_data,
                                          gain=gain,
                                          gain_apply=gain_correct_data)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ________________ test_cosmicray_lacosmic_accepts_quantity_gain _________________
     def test_cosmicray_lacosmic_accepts_quantity_gain():
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         # The units below are the point of the test
         gain = 2.0 * u.electron / u.adu
# Since gain and ccd_data have units, the readnoise should too.
         readnoise = 6.5 * u.electron
      new_ccd = cosmicray_lacosmic(ccd_data,
                                      gain=gain,
                                      gain_apply=True)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:118: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ______________ test_cosmicray_lacosmic_accepts_quantity_readnoise ______________
     def test_cosmicray_lacosmic_accepts_quantity_readnoise():
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         gain = 2.0 * u.electron / u.adu
         # The units below are the point of this test
         readnoise = 6.5 * u.electron
      new_ccd = cosmicray_lacosmic(ccd_data,
                                      gain=gain,
                                      gain_apply=True,
                                      readnoise=readnoise)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:132: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty. ______________ test_cosmicray_lacosmic_warns_on_ccd_in_electrons _______________
recwarn = WarningsRecorder(record=True)

     def test_cosmicray_lacosmic_warns_on_ccd_in_electrons(recwarn):
         # Check that an input ccd in electrons raises a warning.
         ccd_data = ccd_data_func(data_scale=DATA_SCALE)
         # The unit below is important for the test; this unit on
         # input is supposed to raise an error.
         ccd_data.unit = u.electron
         threshold = 5
         add_cosmicrays(ccd_data, DATA_SCALE, threshold, ncrays=NCRAYS)
         noise = DATA_SCALE * np.ones_like(ccd_data.data)
         ccd_data.uncertainty = noise
         # No units here on purpose.
         gain = 2.0
# Don't really need to set this (6.5 is the default value) but want to
         # make lack of units explicit.
         readnoise = 6.5
      new_ccd = cosmicray_lacosmic(ccd_data,
                                      gain=gain,
                                      gain_apply=True,
                                      readnoise=readnoise)
/usr/lib/python3/dist-packages/ccdproc/tests/test_cosmicray.py:175: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/ccdproc/core.py:1525: in cosmicray_lacosmic
     crmask, cleanarr = detect_cosmics(
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  ???
E   TypeError: detect_cosmics() got an unexpected keyword argument 'pssl'

astroscrappy/astroscrappy.pyx:26: TypeError
----------------------------- Captured stdout call ----------------------------- INFO: array provided for uncertainty; assuming it is a StdDevUncertainty. [astropy.nddata.ccddata] ------------------------------ Captured log call ------------------------------- INFO astropy:ccddata.py:263 array provided for uncertainty; assuming it is a StdDevUncertainty.
--- End Message ---

Bug#1001718: marked as done (astroscrappy breaks ccdproc autopkgtest: detect_cosmics() got an unexpected keyword argument 'pssl')

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