Your message dated Mon, 20 Dec 2021 09:59:55 +0100 with message-id <ycbgc9st9fdxh...@an3as.eu> and subject line Upstream has updated the package thus closing the bug has caused the Debian Bug report #994286, regarding r-bioc-destiny: Orphaned upstream, marked for removal in next BioConductor release to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 994286: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994286 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: r-bioc-destiny Severity: critical Justification: breaks unrelated software X-Debbugs-Cc: 991...@bugs.debian.org, debia...@lists.debian.org Hi, as it was discussed on the debian-r mailing list[1] r-bioc-destiny should not block the BioConductor transition. The relevant statement from upstream is: On Tue, Sep 14, 2021 at 7:28 AM Kern, Lori <lori.sheph...@roswellpark.org> wrote: Destiny is currently marked as deprecated and scheduled to be removed in the next Bioconductor release as the maintainers were unresponsive to our requests to fix their package. The package is failing in both release and devel version of Bioconductor and we tried numerous times to reach the maintainer. If you know the maintainer we encourage you to reach out to them to fix the package. Lori Shepherd Bioconductor Core Team This bug should remove r-bioc-destiny from testing to enable the transition of all other r-bioc-* packages. Kind regards Andreas. [1] https://lists.debian.org/debian-r/2021/09/msg00065.html https://lists.debian.org/debian-r/2021/09/msg00067.html -- System Information: Debian Release: 11.0 APT prefers testing APT policy: (501, 'testing'), (50, 'buildd-unstable'), (50, 'unstable'), (5, 'experimental'), (1, 'buildd-experimental') Architecture: amd64 (x86_64) Kernel: Linux 5.10.0-8-amd64 (SMP w/4 CPU threads) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE:de Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages r-bioc-destiny depends on: ii libc6 2.31-13 ii libgcc-s1 10.2.1-6 ii libstdc++6 10.2.1-6 pn r-api-bioc-3.12 <none> ii r-base-core [r-api-4.0] 4.1.1-2 pn r-bioc-biobase <none> pn r-bioc-biocgenerics <none> pn r-bioc-pcamethods <none> pn r-bioc-singlecellexperiment <none> pn r-bioc-summarizedexperiment <none> pn r-cran-ggplot.multistats <none> ii r-cran-ggplot2 3.3.3+dfsg-1 pn r-cran-ggthemes <none> pn r-cran-irlba <none> pn r-cran-knn.covertree <none> ii r-cran-matrix 1.3-2-1 pn r-cran-proxy <none> ii r-cran-rcpp 1.0.6-1 pn r-cran-rcppeigen <none> pn r-cran-rcpphnsw <none> pn r-cran-rspectra <none> ii r-cran-scales 1.1.1-1 pn r-cran-scatterplot3d <none> pn r-cran-smoother <none> ii r-cran-tidyr 1.1.2-1 ii r-cran-tidyselect 1.1.0+dfsg-1 pn r-cran-vim <none> Versions of packages r-bioc-destiny recommends: ii r-cran-testthat 3.0.1-1 Versions of packages r-bioc-destiny suggests: ii r-cran-fnn 1.1.3-2 pn r-cran-igraph <none>
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